View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_high_49 (Length: 207)
Name: NF1504_1D_high_49
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 8273386 - 8273246
Alignment:
| Q |
49 |
gaaaacacccccatcatccggtagccactcccatctatcctcctccccacgaaatctaacattctccaaacgagccatcaaattagcaattagattaccc |
148 |
Q |
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| T |
8273386 |
gaaagcacctccatcatccggtagccactcccatctatcctcctccccacgaaatctaacatcctccaaaagagccatcaaattagcaattagattaccc |
8273287 |
T |
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| Q |
149 |
tcccaaataaacggatttctcctccatgttaaactccaaac |
189 |
Q |
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| T |
8273286 |
tcccaaataaacggatttctcctccatgttaaattccaaac |
8273246 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 32774705 - 32774825
Alignment:
| Q |
59 |
ccatcatccggtagccactcccatctatcctcctccccacgaaatctaacattctccaaacgagccatcaaattagcaattagattaccctcccaaataa |
158 |
Q |
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| T |
32774705 |
ccatcatccggaagccacacccacctatccttctcccctctaaacacaacctcctccaaatgggacatcaaattaacaattagatttatttcccaaatga |
32774804 |
T |
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| Q |
159 |
acggatttctcctccatgtta |
179 |
Q |
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| T |
32774805 |
acggatgtcgcctccacgtta |
32774825 |
T |
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