View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_high_6 (Length: 438)

Name: NF1504_1D_high_6
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_high_6
NF1504_1D_high_6
[»] chr7 (6 HSPs)
chr7 (17-401)||(30087872-30088258)
chr7 (20-293)||(30091943-30092213)
chr7 (24-308)||(30098657-30098938)
chr7 (401-438)||(13077644-13077681)
chr7 (402-438)||(13078705-13078741)
chr7 (359-401)||(30091852-30091895)
[»] chr1 (4 HSPs)
chr1 (23-202)||(35171660-35171839)
chr1 (401-438)||(8090040-8090077)
chr1 (402-438)||(27962617-27962653)
chr1 (402-438)||(48907301-48907337)
[»] chr3 (3 HSPs)
chr3 (401-438)||(39983742-39983779)
chr3 (401-438)||(39984803-39984840)
chr3 (402-438)||(41968188-41968224)
[»] chr2 (8 HSPs)
chr2 (401-438)||(14684670-14684707)
chr2 (401-438)||(21306526-21306563)
chr2 (401-438)||(40421494-40421531)
chr2 (402-438)||(4517243-4517279)
chr2 (402-438)||(14685731-14685767)
chr2 (402-438)||(21307583-21307619)
chr2 (402-438)||(30246572-30246608)
chr2 (402-438)||(40422553-40422589)
[»] chr8 (2 HSPs)
chr8 (402-438)||(45036163-45036199)
chr8 (402-438)||(6540576-6540612)
[»] chr4 (2 HSPs)
chr4 (401-438)||(54938828-54938865)
chr4 (402-438)||(54937788-54937824)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 30088258 - 30087872
Alignment:
Q  17 gacatcattgttggtgttatagattctgatgtgtggcctgagagtcaaagctttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaa 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30088258 gacatcattgttggtgttatagattctggtgtgtggcctgagagtcaaagctttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaa 30088159  T
Q  117 catgtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaataaaggtgtgattgcaggtaactatcgaaa 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30088158 catgtgaaactggccataaattcaatgcctccgtgtgcaacttcaaactgattggagcaagatctttcaataaaggtgtgattgcaggtaactatcgaaa 30088059  T
Q  217 tgttggaatcagcaagaactcagctagtgacagtatcggacatggaactcatacatcatcaactgttgcaggtaac--tgttatttttattgttttttat 314  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||     
T  30088058 tgttggaatcagcaagaactcagctagagacagtatcggacatggaactcatacatcatcaactgttgcaggtaactgtgttatttttattgttttttac 30087959  T
Q  315 atagacaaatagtaacaaattatgttagtttcttggttagtacgctcagcttactatcgagttgtctgcttcggacttcaggtaact 401  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  30087958 atagacaaatagtaacaaattatgttagtttcttggttagtactctcagcttactatcgagttgtttgcttcggacttcaggtaact 30087872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 30092213 - 30091943
Alignment:
Q  20 atcattgttggtgttatagattctgatgtgtggcctgagagtcaaagctttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacat 119  Q
    |||||| |||||||||| || |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  30092213 atcattattggtgttattgactctggtgtatggcctgagagtcaaagctttaaagatgacggcatgacaaagaaaattccgaacaaatggaaaggaacat 30092114  T
Q  120 gtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaataaaggtgtgattgcaggtaactatcgaaatgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |    ||| ||||||    
T  30092113 gtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaacaaaggtgtgattgc---ttcaaatccaaatgt 30092017  T
Q  220 tggaatcagcaagaactcagctagtgacagtatcggacatggaactcatacatcatcaactgttgcaggtaact 293  Q
    | ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30092016 tagaatcaggatgaactcagctagagacagtatcggacatggaactcatacatcatcaacagttgcaggtaact 30091943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 24 - 308
Target Start/End: Original strand, 30098657 - 30098938
Alignment:
Q  24 ttgttggtgttatagattctgatgtgtggcctgagagtcaaagctttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacatgtga 123  Q
    ||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30098657 ttgttggtgttattgatactggtttgtggcctgagagtcaaagctttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacatgtga 30098756  T
Q  124 aactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaataaaggtgtgattgcaggtaactatcgaaatgttgga 223  Q
    |||||||||  |||||||| |||| ||||| ||||||||| ||||||||||||||| |||||| ||||||||||||||   |    ||| |||||||  |    
T  30098757 aactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaacaaaggtgtgattgc---ttcaaatccaaatgttaca 30098853  T
Q  224 atcagcaagaactcagctagtgacagtatcggacatggaactcatacatcatcaactgttgcaggtaactgttatttttattgtt 308  Q
    ||||||| |||||||||||| |||| ||| || ||||||||||| ||||||||||||||||||||||||| || ||||| |||||    
T  30098854 atcagcatgaactcagctagagacactatagggcatggaactcacacatcatcaactgttgcaggtaactattttttttgttgtt 30098938  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 13077681 - 13077644
Alignment:
Q  401 ttgatagaaatcaactgatacagaagaataaaataggg 438  Q
    |||||||||||||||||||| |||||||||||||||||    
T  13077681 ttgatagaaatcaactgatatagaagaataaaataggg 13077644  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 13078741 - 13078705
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||||||||||||| |||||||||||||||||    
T  13078741 tgatagaaatcaactgatatagaagaataaaataggg 13078705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 30091895 - 30091852
Alignment:
Q  359 ctcagcttacta-tcgagttgtctgcttcggacttcaggtaact 401  Q
    |||||||||||| ||||| |||||||||||||||||||||||||    
T  30091895 ctcagcttactaatcgagctgtctgcttcggacttcaggtaact 30091852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 35171839 - 35171660
Alignment:
Q  23 attgttggtgttatagattctgatgtgtggcctgagagtcaaagctttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacatgtg 122  Q
    |||||||||||||| ||   || ||| |||||||| ||| ||||||||||||| ||||||||| | || || || ||||  ||||||||||||| ||||     
T  35171839 attgttggtgttattgacagtggtgtttggcctgaaagtgaaagctttaaagacgatggcatgtcgaaaaacatcccaacaaaatggaaaggaaaatgtc 35171740  T
Q  123 aaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaataaaggtgtgattgca 202  Q
    || | || ||  | |||||  | || ||||| ||||| ||| | ||||||||||||| |||||| |||||||||||||||    
T  35171739 aagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgca 35171660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 8090040 - 8090077
Alignment:
Q  401 ttgatagaaatcaactgatacagaagaataaaataggg 438  Q
    |||||||||||||||||||| |||||||||||||||||    
T  8090040 ttgatagaaatcaactgatatagaagaataaaataggg 8090077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 27962617 - 27962653
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  27962617 tgatagaaaccaactgatatagaagaataaaataggg 27962653  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 48907301 - 48907337
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  48907301 tgatagaaatcaattgatatagaagaataaaataggg 48907337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 39983742 - 39983779
Alignment:
Q  401 ttgatagaaatcaactgatacagaagaataaaataggg 438  Q
    |||||||||||||||||||| |||||||||||||||||    
T  39983742 ttgatagaaatcaactgatatagaagaataaaataggg 39983779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 39984803 - 39984840
Alignment:
Q  401 ttgatagaaatcaactgatacagaagaataaaataggg 438  Q
    |||||||||||||||||||| |||||||||||||||||    
T  39984803 ttgatagaaatcaactgatatagaagaataaaataggg 39984840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 41968188 - 41968224
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  41968188 tgatagaaaccaactgatatagaagaataaaataggg 41968224  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 14684707 - 14684670
Alignment:
Q  401 ttgatagaaatcaactgatacagaagaataaaataggg 438  Q
    |||||||||||||||||||| |||||||||||||||||    
T  14684707 ttgatagaaatcaactgatatagaagaataaaataggg 14684670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 21306563 - 21306526
Alignment:
Q  401 ttgatagaaatcaactgatacagaagaataaaataggg 438  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21306563 ttgatagaaatcaactgatatagaagaataaaataggg 21306526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 40421531 - 40421494
Alignment:
Q  401 ttgatagaaatcaactgatacagaagaataaaataggg 438  Q
    |||||||||||||||||||| |||||||||||||||||    
T  40421531 ttgatagaaatcaactgatatagaagaataaaataggg 40421494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 4517243 - 4517279
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4517243 tgatagaaatcaactgatatagaagaataaaataggg 4517279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 14685767 - 14685731
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||||||||||||| |||||||||||||||||    
T  14685767 tgatagaaatcaactgatatagaagaataaaataggg 14685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 21307619 - 21307583
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||||||||||||| |||||||||||||||||    
T  21307619 tgatagaaatcaactgatatagaagaataaaataggg 21307583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 30246608 - 30246572
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||||||||||||| |||||||||||||||||    
T  30246608 tgatagaaatcaactgatatagaagaataaaataggg 30246572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 40422589 - 40422553
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||||||||||||| |||||||||||||||||    
T  40422589 tgatagaaatcaactgatatagaagaataaaataggg 40422553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 45036163 - 45036199
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||||||||||||| |||||||||||||||||    
T  45036163 tgatagaaatcaactgatatagaagaataaaataggg 45036199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 6540576 - 6540612
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  6540576 tgatagaaaccaactgatatagaagaataaaataggg 6540612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 54938828 - 54938865
Alignment:
Q  401 ttgatagaaatcaactgatacagaagaataaaataggg 438  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  54938828 ttgatagaaaccaactgatatagaagaataaaataggg 54938865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 54937788 - 54937824
Alignment:
Q  402 tgatagaaatcaactgatacagaagaataaaataggg 438  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  54937788 tgatagaaaccaactgatatagaagaataaaataggg 54937824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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