View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_1 (Length: 526)
Name: NF1504_1D_low_1
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 15 - 504
Target Start/End: Original strand, 11998284 - 11998769
Alignment:
| Q |
15 |
tggacatcagaatgctcataaaagggagagaacattggcgaagcgcgctatgcgagtagggatgtttaccgaaaggtatacaagcttagcttctttacct |
114 |
Q |
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| T |
11998284 |
tggacatcagaatgctcataaaagggagagaacattggcgaagcgcgctatgcgagtagggatgtttaccgaaaggtatacaagcttagcttctttacct |
11998383 |
T |
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| Q |
115 |
cttcatggttcttcttcttttcatcctcttggtattcaagctcatgctgcaatgcaccaaaaccatatgccatcatcgttgtcgatgctgatgagggctc |
214 |
Q |
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| T |
11998384 |
cttcatggttcttcttcttttcatcctcttggtattcaagctcatgctgcaatgcaccaaaaccatatgccatcatcgtcgtcgatgctgatgagggctc |
11998483 |
T |
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| Q |
215 |
atgatatgagacctacagcgaaatttgagaaagattgttttggagcagcaccgatgtttatgcataatgacgatgttggcgtattttggcctggaagttt |
314 |
Q |
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| T |
11998484 |
atgatatgagacctacagcgaaattcgagaaagattgttttggagcagcaccgatgtttatgcataatgacgatgttggcatattttggcctggaagttt |
11998583 |
T |
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| Q |
315 |
caggcagataaatcaaagtgttcataattcaaatttgaatactagttttgtagcaactgaacctcctcaacaaacatctagtacatctcctgatcttact |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11998584 |
caggcagataaatcaaagtgttcataattcaaatttgaatactagttttgtagcaactgaacctcctcaacaaacatctactacatctcctgatcttact |
11998683 |
T |
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| Q |
415 |
ttgaggctttaatatttttgtatcttaattaaattctaatattagnnnnnnngtggcaataattaaacaactatatttctcatgttcatt |
504 |
Q |
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| T |
11998684 |
ttgaggctttaatatttttgtatcttaattaaattctaatattagtttttttgtggcaa----taaacaactacatttctcatgttcatt |
11998769 |
T |
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