View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_102 (Length: 205)
Name: NF1504_1D_low_102
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_102 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 1629973 - 1629777
Alignment:
| Q |
1 |
aaatttaggtattgatggacttcccttcattgcacgagacatacccttccaaaatcccgccggtccacacaagggtcaagctgtggcgctaagatcagcc |
100 |
Q |
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| T |
1629973 |
aaatttaggtattgatggacttcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcg |
1629874 |
T |
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| Q |
101 |
tccgatctctcagttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatct |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629873 |
tccgatctctcagttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatct |
1629777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 1606675 - 1606479
Alignment:
| Q |
1 |
aaatttaggtattgatggacttcccttcattgcacgagacatacccttccaaaatcccgccggtccacacaagggtcaagctgtggcgctaagatcagcc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1606675 |
aaatttaggtattgatggacttcacttcattgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtggcgctaagatcagcc |
1606576 |
T |
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| Q |
101 |
tccgatctctcagttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatct |
197 |
Q |
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| T |
1606575 |
tccgatctctcagttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatct |
1606479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 10820725 - 10820921
Alignment:
| Q |
1 |
aaatttaggtattgatggacttcccttcattgcacgagacatacccttccaaaatcccgccggtccacacaagggtcaagctgtggcgctaagatcagcc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
10820725 |
aaatttaggtattgatggacttcacttcattgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtggcgctccgatcagcc |
10820824 |
T |
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| Q |
101 |
tccgatctctcagttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatct |
197 |
Q |
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| T |
10820825 |
tctgatctctccgtcttctaccggtgtacaatatcgggttaccaagacaccctcatggctcatgcacaacgtcaattttacagacaatgcttcatct |
10820921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 1623797 - 1623601
Alignment:
| Q |
1 |
aaatttaggtattgatggacttcccttcattgcacgagacatacccttccaaaatcccgccggtccacacaagggtcaagctgtggcgctaagatcagcc |
100 |
Q |
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||||| ||| ||||||||||||| ||||||||||| ||||| |||| |||||| | || ||||| ||||| || |||||||||||||| |||||||| |
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| T |
1623797 |
aaattcaggcattgatggacttcatttcattgcacgtgacattacctttcaaaatactgctggtcctcacaaaggccaagctgtggcgctccgatcagcc |
1623698 |
T |
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| Q |
101 |
tccgatctctcagttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatct |
197 |
Q |
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||||||||||| || |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
1623697 |
tccgatctctctgtcttctatcggtgtgctatatcgggctatcaagacactctgatggctcatgcacaacgtcaattctaccgacaatgcttcatct |
1623601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 18781491 - 18781295
Alignment:
| Q |
1 |
aaatttaggtattgatggacttcccttcattgcacgagacatacccttccaaaatcccgccggtccacacaagggtcaagctgtggcgctaagatcagcc |
100 |
Q |
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||||| ||| ||||||||||||| |||||||| || |||||| ||||||||||| | || ||||| || || ||||||||||||||||| |||||||| |
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| T |
18781491 |
aaattcaggcattgatggacttcatttcattgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcc |
18781392 |
T |
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| Q |
101 |
tccgatctctcagttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatct |
197 |
Q |
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||||||||||| || |||||||||||||| ||||| || || |||||||| || ||||| ||||| |||||||||||||| ||||||||||||||| |
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| T |
18781391 |
tccgatctctctgtcttctatcggtgtgctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacagacaatgcttcatct |
18781295 |
T |
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