View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_12 (Length: 405)

Name: NF1504_1D_low_12
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_12
NF1504_1D_low_12
[»] chr2 (31 HSPs)
chr2 (18-405)||(39214722-39215109)
chr2 (22-199)||(39601994-39602171)
chr2 (225-395)||(39601861-39602031)
chr2 (224-350)||(39450414-39450540)
chr2 (18-199)||(39382101-39382282)
chr2 (18-218)||(39488078-39488278)
chr2 (18-201)||(39450500-39450683)
chr2 (229-341)||(39220086-39220198)
chr2 (130-201)||(39458210-39458281)
chr2 (227-341)||(39199516-39199630)
chr2 (129-218)||(39399012-39399101)
chr2 (21-190)||(39474168-39474337)
chr2 (18-218)||(39151882-39152082)
chr2 (18-201)||(39136282-39136465)
chr2 (224-347)||(39151816-39151939)
chr2 (227-338)||(39382247-39382358)
chr2 (224-347)||(39458127-39458250)
chr2 (228-338)||(39488225-39488335)
chr2 (33-194)||(39199385-39199546)
chr2 (277-396)||(44614345-44614464)
chr2 (136-194)||(39129491-39129549)
chr2 (224-350)||(39399044-39399170)
chr2 (21-193)||(39416260-39416435)
chr2 (18-114)||(39220250-39220346)
chr2 (130-201)||(39422489-39422560)
chr2 (224-347)||(39474308-39474431)
chr2 (224-301)||(39416403-39416480)
chr2 (313-366)||(39479278-39479331)
chr2 (140-188)||(27154993-27155041)
chr2 (138-190)||(39391674-39391726)
chr2 (154-194)||(39479182-39479222)
[»] chr6 (2 HSPs)
chr6 (141-220)||(16112406-16112485)
chr6 (224-341)||(16112348-16112465)
[»] chr7 (1 HSPs)
chr7 (130-201)||(19806643-19806714)


Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 39215109 - 39214722
Alignment:
Q  18 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39215109 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccctgcattttctcatgagcctcgtcaattcttctaacacaa 39215010  T
Q  118 ctgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgc 217  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39215009 ctgacctgtgtcttcttattttcaagctctttacagcactcctcaacatatctctttatggactgcaatctcttctcctctactttcctcttcctcttgc 39214910  T
Q  218 aatgcccaatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtcttt 317  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39214909 aatgcccaatatctctctttagagactgaaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttttctaacatagcaaggtcttt 39214810  T
Q  318 cttcagcaaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcatctccgtcttca 405  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39214809 cttcagcgaggaaaatgatttatgggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcatctccgtcttca 39214722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 39602171 - 39601994
Alignment:
Q  22 aaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactga 121  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  ||||| ||||| |||||| |    
T  39602171 aaatagagttgcccttccttcactacaaaatccttaatacattcttcaatttttccctgcattttctcatgagcttcgaaaattcctctaaaacaactaa 39602072  T
Q  122 cctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctcta 199  Q
      |   | ||||| |||||||||||||| | |||||| | || || | ||||||||||||||||||| ||||| ||||    
T  39602071 tttcctttttcttattttcaagctctttgcggcactcctgaatatctatctttatggactgcaatctattctcttcta 39601994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 225 - 395
Target Start/End: Complemental strand, 39602031 - 39601861
Alignment:
Q  225 aatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagc 324  Q
    ||||||| ||||||  ||||||||||| ||||| |||| || |  |||| | |||| ||||| |||| | || |||||||  |||||| |||||||||||    
T  39602031 aatatctatctttatggactgcaatctattctcttctaatttcgtcttcttattgccttcctgaaatgagttttctaacaatgcaaggcctttcttcagc 39601932  T
Q  325 aaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcatc 395  Q
     |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  39601931 gaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatcttcatc 39601861  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 224 - 350
Target Start/End: Complemental strand, 39450540 - 39450414
Alignment:
Q  224 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 323  Q
    |||||||| |||| |  |||||||||||||| || ||||||| |  ||||||||| ||||||||||||||||| |||||||  | |||||||||||||||    
T  39450540 caatatctgtcttgatggactgcaatctcttttcttctactttctgcttccttttacattcctcaaataatttttctaacaatgtaaggtctttcttcag 39450441  T
Q  324 caaggaaaatgatttatcggttgattt 350  Q
    | |||||||||||||||| ||| ||||    
T  39450440 cgaggaaaatgatttatcagttaattt 39450414  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 39382101 - 39382282
Alignment:
Q  18 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaa 117  Q
    ||||||||||||||   |||||||||||||||| ||||| |||||||||||| ||||| | |||| ||| |||  | | |  |||||||||||||||  |    
T  39382101 catcaaatagagctgatcttccttcactacaaactccttgatacattcttcagttttttcctgcactttgtcacaaacttgatcaattcttctaacaaca 39382200  T
Q  118 ctgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctcta 199  Q
    || || ||  ||||||| |||| ||||||||| |||||||| |||  || ||||||||||||||| ||||||||||| ||||    
T  39382201 ctaacttggttcttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgtaatctcttctcttcta 39382282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 39488078 - 39488278
Alignment:
Q  18 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaa 117  Q
    ||||||||| ||||  ||||||||  |||||||||| || | ||||||||||||||| || ||||||||||  ||| | |||| |||||||| |||||||    
T  39488078 catcaaatatagctgtccttcctttgctacaaaatctttgacacattcttcaattttcccctgcattttctagtgaacttcgttaattcttccaacacaa 39488177  T
Q  118 ctgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgc 217  Q
    || |  |   | ||||| ||||||||||||||| ||||||| ||||||| ||||||||| ||||||| ||||  ||| ||||||  ||| ||||| ||||    
T  39488178 ctaatttcctttttcttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctacttgccttttccttttgc 39488277  T
Q  218 a 218  Q
    |    
T  39488278 a 39488278  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 39450683 - 39450500
Alignment:
Q  18 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaa 117  Q
    |||||||||||||| ||||||||| || ||||| | ||| ||||| || ||||||| | | |||| ||| ||| || | || ||||||||||||||||||    
T  39450683 catcaaatagagctgcccttcctttaccacaaactgcttgatacaatcgtcaatttcttcctgcactttgtcacgaacttcatcaattcttctaacacaa 39450584  T
Q  118 ctgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctact 201  Q
    || || ||  | ||||| |||| ||||||||| ||||| || |||| || | |||| ||||||||||||||||| || ||||||    
T  39450583 ctaacttgctttttcttattttgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctcttttcttctact 39450500  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 229 - 341
Target Start/End: Complemental strand, 39220198 - 39220086
Alignment:
Q  229 tctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaagg 328  Q
    ||||||||||  ||||| |||||  |||| || |||| |  ||||||||| || |||||||||||||| |||||||  |||||||||||||||||| |||    
T  39220198 tctctctttatggactgtaatcttctctcttcaactttctgcttccttttacactcctcaaataatttttctaacaccgcaaggtctttcttcagcgagg 39220099  T
Q  329 aaaatgatttatc 341  Q
    |||||||||||||    
T  39220098 aaaatgatttatc 39220086  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 39458281 - 39458210
Alignment:
Q  130 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctact 201  Q
    |||||||||||||| ||||| |||||||| |||| || ||||||||||||||||||||||||||| ||||||    
T  39458281 ttcttgttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctact 39458210  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 39199516 - 39199630
Alignment:
Q  227 tatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaa 326  Q
    ||||||||||||  ||||||||||| ||||| || |||| |  ||||||||||||||||| ||||||||  |||| ||  | ||| |||||||||||| |    
T  39199516 tatctctctttatggactgcaatcttttctcttcaactttctgcttccttttgcattccttaaataattcttctagcagcgtaagctctttcttcagcga 39199615  T
Q  327 ggaaaatgatttatc 341  Q
    |||||||||||||||    
T  39199616 ggaaaatgatttatc 39199630  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 39399012 - 39399101
Alignment:
Q  129 cttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgca 218  Q
    |||||| ||| |||| ||||| ||||| || |||| || ||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  39399012 cttcttttttccaagttctttccagcagtcttcaatatctctctttatggactgcaatctcttctcttctactttcctcttccttttgca 39399101  T

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Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 39474168 - 39474337
Alignment:
Q  21 caaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactg 120  Q
    |||||||||||  || |||||  ||||||||||||| | |||||||||||||||||| ||||||||||  ||||| ||||  ||||||| ||||  |||     
T  39474168 caaatagagctgtccatcctttgctacaaaatccttgacacattcttcaatttttccctgcattttcttgtgagcttcgttcattcttccaacatgacta 39474267  T
Q  121 acctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 190  Q
    |  |   | ||||| |||||||||||||   ||||||| |||| || |||||||||||| ||||||||||    
T  39474268 attttctttttcttattttcaagctcttcggagcactcctcaatatctctctttatggaatgcaatctct 39474337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 39152082 - 39151882
Alignment:
Q  18 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaa 117  Q
    |||||||||||||| |||||||||  ||||||||||||| | |||||| |||||||| || ||||||||||    ||| |||| |||||||| ||||||     
T  39152082 catcaaatagagctgcccttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacag 39151983  T
Q  118 ctgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgc 217  Q
     | |  |   | ||||| ||||||||||||||  |||  || |||| || ||||||||| ||||||| ||||||||| ||||||  ||| ||||| ||||    
T  39151982 gtaatttcctttttcttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctacttgccttttccttttgc 39151883  T
Q  218 a 218  Q
    |    
T  39151882 a 39151882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 39136465 - 39136282
Alignment:
Q  18 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaa 117  Q
    |||||||  ||||| |||||||||  ||||||||||||| | |||||| ||||||||||| ||||||||||   |||| |||  |||||||| ||||       
T  39136465 catcaaaccgagctgcccttcctttgctacaaaatccttgacacattcgtcaatttttccctgcattttcttgcgagcttcgataattcttccaacatcc 39136366  T
Q  118 ctgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctact 201  Q
    || |  |   | ||||| |||||||| ||||  |||||||| |||| || |||||||||||||||||||||| |||| ||||||    
T  39136365 ctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctact 39136282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 347
Target Start/End: Complemental strand, 39151939 - 39151816
Alignment:
Q  224 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 323  Q
    |||||| ||||||||  ||||||| ||||||||| |||||||||   |||||||||||||| |||| | |||| || |  |  ||||| |||||||||||    
T  39151939 caatatttctctttattgactgcagtctcttctcttctacttgccttttccttttgcattcatcaattgatttttccacaaatgcaagctctttcttcag 39151840  T
Q  324 caaggaaaatgatttatcggttga 347  Q
    |||||||| ||||||||| |||||    
T  39151839 caaggaaattgatttatcagttga 39151816  T

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Target: chr2; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 39382247 - 39382358
Alignment:
Q  227 tatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaa 326  Q
    ||||||||||||  ||||| ||||||||||| |||| || |  ||||| |||||||||| |||||||||  |||||||  | |||||||||||||||| |    
T  39382247 tatctctctttatggactgtaatctcttctcttctagtttctgcttccatttgcattccacaaataattcttctaacagcgtaaggtctttcttcagcga 39382346  T
Q  327 ggaaaatgattt 338  Q
    |||||| |||||    
T  39382347 ggaaaacgattt 39382358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 347
Target Start/End: Complemental strand, 39458250 - 39458127
Alignment:
Q  224 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 323  Q
    |||||||||||||||  ||||||||||||||||| ||||||||   | |||||||||| ||||||||| |||| |||| ||  |  || |||||||||||    
T  39458250 caatatctctctttatggactgcaatctcttctcttctacttgtctcgtccttttgcaatcctcaaatgatttttctaccaatgtgagttctttcttcag 39458151  T
Q  324 caaggaaaatgatttatcggttga 347  Q
    | || ||||||||| ||| |||||    
T  39458150 cgagaaaaatgattcatcagttga 39458127  T

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Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 338
Target Start/End: Original strand, 39488225 - 39488335
Alignment:
Q  228 atctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaag 327  Q
    ||||||||||| |||||||| ||||  ||| |||||||||   ||||||||||||||||||||| |  | |||| ||  ||||| ||||| |||||||||    
T  39488225 atctctctttatagactgcagtctcccctcttctacttgccttttccttttgcattcctcaaatgaggtttctaccaatgcaagttcttttttcagcaag 39488324  T
Q  328 gaaaatgattt 338  Q
    |||||||||||    
T  39488325 gaaaatgattt 39488335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 39199385 - 39199546
Alignment:
Q  33 cccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttc 132  Q
    ||||| ||| |||||||| || || ||||| || ||||||||| | |||| || ||   |||| || |||||||||||||||  ||| || ||  |||||    
T  39199385 ccctttctttactacaaactcattgatacaatcatcaattttttcctgcacttccttgcgagcttcatcaattcttctaacaacactaacttggttcttc 39199484  T
Q  133 ttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctc 194  Q
    || |||| ||||||||| |||||||| |||  || ||||||||||||||||||||| |||||    
T  39199485 ttattttgaagctctttgcagcactcttcagtatctctctttatggactgcaatcttttctc 39199546  T

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Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 396
Target Start/End: Complemental strand, 44614464 - 44614345
Alignment:
Q  277 ttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgaca 376  Q
    ||||||||||||||| |||| | ||||   ||||| |||||| ||||| ||||||||||  |||| | ||||||||||| ||||||| ||| || | ||     
T  44614464 ttgcattcctcaaatgatttttttaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctgaccttttatttatattcaacg 44614365  T
Q  377 aaagaatatcatcttcatct 396  Q
    || |||||||||||||||||    
T  44614364 aaggaatatcatcttcatct 44614345  T

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Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 39129549 - 39129491
Alignment:
Q  136 ttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctc 194  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||||||||||||||    
T  39129549 ttttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctc 39129491  T

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Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 350
Target Start/End: Original strand, 39399044 - 39399170
Alignment:
Q  224 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 323  Q
    |||||||||||||||  ||||||||||||||||| ||||||| |  |||||||||||||| || ||| ||||| |||| ||    ||  |||||||| ||    
T  39399044 caatatctctctttatggactgcaatctcttctcttctactttcctcttccttttgcatttcttaaacaatttttctaccaatttaacttctttcttgag 39399143  T
Q  324 caaggaaaatgatttatcggttgattt 350  Q
    | | |||||||||||||| | ||||||    
T  39399144 cgatgaaaatgatttatcagctgattt 39399170  T

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Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 39416260 - 39416435
Alignment:
Q  21 caaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgag---cctcgtcaattcttctaacacaa 117  Q
    |||||||||||  ||||||||  ||||||||||||| | |||||||||| ||||| | ||||||||||  ||||   | |||| |||||||| |||| ||    
T  39416260 caaatagagctgtccttcctttgctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataa 39416359  T
Q  118 ctgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttct 193  Q
    || |  |   | | ||| |||||||| ||| | |||||||| |||| || |||||||||||| |||||||||||||    
T  39416360 ctaatttccttttgcttattttcaagttctctgcagcactcctcaatatctctctttatggaatgcaatctcttct 39416435  T

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Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 39220346 - 39220250
Alignment:
Q  18 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaaca 114  Q
    |||||||||||||| | |||| ||||||||||| ||||| ||||| || ||||||||| | |||| ||||||   ||| || |||||||||||||||    
T  39220346 catcaaatagagctcctcttctttcactacaaactccttgatacaatcgtcaattttttcctgcactttctcgcaagcatcatcaattcttctaaca 39220250  T

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Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 39422489 - 39422560
Alignment:
Q  130 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctact 201  Q
    ||||| ||||| |||||||| |||||||  |||| || ||||||||||||||||||| ||||||| ||||||    
T  39422489 ttcttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctact 39422560  T

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Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 347
Target Start/End: Original strand, 39474308 - 39474431
Alignment:
Q  224 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 323  Q
    |||||||||||||||  || |||||||||| ||  |||| ||||  | |||||| ||| ||||||||| |||| ||||  |  ||||| |||||||| ||    
T  39474308 caatatctctctttatggaatgcaatctctccttttctatttgcgtcgtcctttggcaatcctcaaatgatttttctacaaatgcaagttctttcttgag 39474407  T
Q  324 caaggaaaatgatttatcggttga 347  Q
      |||||||||||||||| |||||    
T  39474408 tgaggaaaatgatttatccgttga 39474431  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 39416403 - 39416480
Alignment:
Q  224 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatcta 301  Q
    |||||||||||||||  || |||||||||||||  ||||||||||  | |||| ||| |||||||||| |||| ||||    
T  39416403 caatatctctctttatggaatgcaatctcttcttttctacttgcatgtcccttctgcgttcctcaaatgatttttcta 39416480  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 39479278 - 39479331
Alignment:
Q  313 tctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaatt 366  Q
    |||||||||||| |||||||||||||||| || ||||| || | ||||||||||    
T  39479278 tctttcttcagcgaggaaaatgatttatcagtcgattttcccgaccttttaatt 39479331  T

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Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 27154993 - 27155041
Alignment:
Q  140 caagctctttacagcactcatcaacatatctctttatggactgcaatct 188  Q
    ||||||||||  ||||||| |||| || |||||||||||||||||||||    
T  27154993 caagctctttggagcactcctcaatatctctctttatggactgcaatct 27155041  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 39391674 - 39391726
Alignment:
Q  138 ttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 190  Q
    |||||||||||| |||||||| |||| || | ||||||||||| |||||||||    
T  39391674 ttcaagctctttgcagcactcttcaatatctttctttatggacagcaatctct 39391726  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 39479182 - 39479222
Alignment:
Q  154 cactcatcaacatatctctttatggactgcaatctcttctc 194  Q
    ||||| |||| || |||||||||||||||||||||||||||    
T  39479182 cactcttcaatatctctctttatggactgcaatctcttctc 39479222  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 16112485 - 16112406
Alignment:
Q  141 aagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgcaat 220  Q
    |||||||||||| || || |||| || ||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||    
T  16112485 aagctctttacaacattcttcaatatctctctttatggactgcaatttcttctcttcttctgtcctcttccttttgcaat 16112406  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 16112465 - 16112348
Alignment:
Q  224 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 323  Q
    |||||||||||||||  ||||||||| ||||||| ||| ||  |  |||||||||||| | || ||| ||||| |||| || |  ||  || ||||||||    
T  16112465 caatatctctctttatggactgcaatttcttctcttcttctgtcctcttccttttgcaattcttaaacaatttttctaccaaattaacttcattcttcag 16112366  T
Q  324 caaggaaaatgatttatc 341  Q
    | ||||||||||||||||    
T  16112365 cgaggaaaatgatttatc 16112348  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 19806714 - 19806643
Alignment:
Q  130 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctact 201  Q
    ||||| |||||||| ||||  ||||| || |||| || |||||||||||||||||||||| |||| ||||||    
T  19806714 ttcttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctact 19806643  T

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