View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_13 (Length: 400)
Name: NF1504_1D_low_13
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 53043577 - 53043200
Alignment:
| Q |
1 |
taaaatggtaagtttactacctttttatattggtaaacaacataagtttacagaaaatggggaattaaaacaatgaaagaggagaactataaacacactt |
100 |
Q |
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| T |
53043577 |
taaaatggtaagtttactacctttttatattggtaaacaacataagtttacagaaaatggggaattaaaacaatgaaagaggagaactataaacacactt |
53043478 |
T |
|
| Q |
101 |
aaacattaatgagttgcatccaaatatcattgctaataagtaaaggaatatattgacagtgtaaatgaatatatcaactgaaaaactaaaagaacatatt |
200 |
Q |
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| T |
53043477 |
aaacattaatgagttgcatccaaatatcattgctaataagtaaaggaatatattgacagtgtaaatgaatatatcaactgaaaaactaaaagaacatatt |
53043378 |
T |
|
| Q |
201 |
accaaagcaactttggaggatgagaatcaattgtcttatcatcatcactgactgttttacgcggaagaggagcaaagccaccaaacaaaccccagaattc |
300 |
Q |
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| T |
53043377 |
accaaagcaactttggaggatgagaatcaattgtcttatcatcatcactgactgttttacgcggaagaggagcaaagccaccaaacaaaccccagaattc |
53043278 |
T |
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| Q |
301 |
tccagattcagagtcagccatcaaccttccatcctcttcatggaaattcaaatgtaaacatccgatacacaacaatga |
378 |
Q |
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| T |
53043277 |
tccagattcagagtcagccatcaaccttccatcctcttcatggaaattcaaatgtaaacatccgatacacaacaatga |
53043200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 351
Target Start/End: Original strand, 15964539 - 15964655
Alignment:
| Q |
235 |
cttatcatcatcactgactgttttacgcggaagaggagcaaagccaccaaacaaaccccagaattctccagattcagagtcagccatcaaccttccatcc |
334 |
Q |
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| T |
15964539 |
cttatcattatcactggctgcttttcgtggaagaggagcaaatccgccaaagaaaccccagaattccccagtttcaggatcagccattaactttccatcc |
15964638 |
T |
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| Q |
335 |
tcttcatggaaattcaa |
351 |
Q |
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| T |
15964639 |
tctgcttggaagttcaa |
15964655 |
T |
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