View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_18 (Length: 353)

Name: NF1504_1D_low_18
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_18
NF1504_1D_low_18
[»] chr7 (1 HSPs)
chr7 (1-353)||(34800247-34800587)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 34800587 - 34800247
Alignment:
Q  1 tcattgtatgtctcccgctgtgctaatttaaaggcatcttctcccgaagttagaaaaggtgactatatctaattacctagaaatggagcgtttcctgaag 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34800587 tcattgtatgtctcccgctgtgctaatttagaggcatcttctcccgaagttagaaaaggtgactatatctaattacctagaaatggagcgtttcctgaag 34800488  T
Q  101 ggggtatgcctcctatctttatatcgctttatatcagggattgcgagaaactactgaggagatcatctccaacttcgatgggcatgcttatccatatttc 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||  |              
T  34800487 ggggtatgcctcctatctttagatcgctttatatcagggattgcgagaaactactgaggagatcatctctaacttcgat--gcatgcaca---------- 34800400  T
Q  201 aattggaggtcaatgtgatggcgtcaactccttccccaatgggtggaaaatgtatgcacacgttgggcctctccacttcacatctcgttgctgaatcgac 300  Q
      |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  34800399 cgttggagttccatgtgatggcgtcaactccttccccaatgggtggaaaatgtatgcacacgttgggcttctccacttcacatctcgttgctgaatcaac 34800300  T
Q  301 tttgtctcatcgttcactgggagtgttggaatggggcagtgtcaaataagaag 353  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34800299 tttgtctcatcgttcactgggagtgatggaatggggcagtgtcaaataagaag 34800247  T

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