View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_19 (Length: 351)
Name: NF1504_1D_low_19
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 405688 - 405368
Alignment:
| Q |
8 |
ttcgtgttcgtgaatgcttcatagttcaaaacaaataagaggatgaataaaacaagtgtgagagtttaccaatgacccataatttttccatctgacccag |
107 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
405688 |
ttcgtgttcgtgagtgtttcatagttcaaaacaaataagaggatgaataaaacaactgtgagagtttaccaatgacccataatttttccatctga----- |
405594 |
T |
|
| Q |
108 |
gactaaatctgatctttaaatcctttgagctgaaattcttcattgagcttgtcaatgagaacaggcccacaaacaccacacctcacatcacgacttccat |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
405593 |
------------tctttaaatcctttgagctgaatttcttcattgagcttgtcaatgagaacaggcccacaaacaccacacctcacatcacgacttccgt |
405506 |
T |
|
| Q |
208 |
gagcacacacaaaattatatgaacctgctatcacatcttgcactccactatcccatggtttacaactcactattgcatcattgaagaagctatcaaaatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
405505 |
gagcacacacaaaattatatgaacctgctatcacatcttgcactccactatcccatggtttacaactcactattacatcattgaagaagctatcaaaatt |
405406 |
T |
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| Q |
308 |
tgattccttcaaacccctttccaatcaaacaacaaaac |
345 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
405405 |
tgagtccttcaaacccctttccaatcaaacaacaaaac |
405368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 114 - 342
Target Start/End: Complemental strand, 416770 - 416542
Alignment:
| Q |
114 |
atctgatctttaaatcctttgagctgaaattcttcattgagcttgtcaatgagaacaggcccacaaacaccacacctcacatcacgacttccatgagcac |
213 |
Q |
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||||||||||| |||||| |||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
416770 |
atctgatctttcaatcctcggagctgaacttcttcattgaacttgtcaatgagcacaggcccacaaacaccacacctcacgtcacgacttccatgagcac |
416671 |
T |
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| Q |
214 |
acacaaaattatatgaacctgctatcacatcttgcactccactatcccatggtttacaactcactattgcatcattgaagaagctatcaaaatttgattc |
313 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||| | |||||| |||||||||||| || |||||| ||| |||||||| | ||| ||||| |
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| T |
416670 |
acacaaaaatatatgaacctgctatcacgtcttgcactccaccaccccatgatttacaactcaccataacatcatcgaaaaagctatccacattcgattc |
416571 |
T |
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| Q |
314 |
cttcaaacccctttccaatcaaacaacaa |
342 |
Q |
| |
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| T |
416570 |
ctccaagccccttttcaatcaaacaacaa |
416542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 174 - 341
Target Start/End: Original strand, 399821 - 399989
Alignment:
| Q |
174 |
ccacaaacaccacacctcaca-tcacgacttccatgagcacacacaaaattatatgaacctgctatcacatcttgcactccactatcccatggtttacaa |
272 |
Q |
| |
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||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
399821 |
ccacaaacagcacaccttacaatcacgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgcactccactatcccatggtttacaa |
399920 |
T |
|
| Q |
273 |
ctcactattgcatcattgaagaagctatcaaaatttgattccttcaaacccctttccaatcaaacaaca |
341 |
Q |
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| T |
399921 |
ctcaccattacatcattgaagaaactatcaacatttgattccttcaaactccttttcaatcaaacaaca |
399989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 398530 - 398598
Alignment:
| Q |
114 |
atctgatctttaaatcctttgagctgaaattcttcattgagcttgtcaatgagaacaggcccacaaaca |
182 |
Q |
| |
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| T |
398530 |
atctgatctttcaatcctctgagctgaatgtcttcattgagcttgtcaatgagaacaggtccacaaaca |
398598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 416903 - 416823
Alignment:
| Q |
40 |
aaataagaggatgaataaaacaagtgtgagagtttaccaatgacccataatttttccatctgacccaggactaaatctgat |
120 |
Q |
| |
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|||||||||||| |||| | ||||||||||| | ||||||||||||||||||||||||||| ||| |||||||| |||| |
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| T |
416903 |
aaataagaggatctataatagaagtgtgagagctcaccaatgacccataatttttccatctggtccatgactaaatgtgat |
416823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 22517048 - 22517183
Alignment:
| Q |
114 |
atctgatctttaaatcctttgagctgaaattcttcattgagcttgtcaatgagaacaggcccacaaacaccacacctcacatcacgacttccatgagcac |
213 |
Q |
| |
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||||||||||| |||||| |||||||| |||||| |||| |||||||||||| |||| ||||||||||| |||||||| || |||||||||||||||| |
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| T |
22517048 |
atctgatctttcaatcctcggagctgaatttcttctttgaacttgtcaatgagcacagagccacaaacaccgcacctcacgtcgcgacttccatgagcac |
22517147 |
T |
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| Q |
214 |
acacaaaattatatgaacctgctatcacatcttgca |
249 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
22517148 |
acacaaaaatatatgaacctgctatcacatcttgca |
22517183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 12215386 - 12215438
Alignment:
| Q |
162 |
atgagaacaggcccacaaacaccacacctcacatcacgacttccatgagcaca |
214 |
Q |
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|||||||| ||||||||| |||||| || |||||||| |||||||||||||| |
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| T |
12215386 |
atgagaactggcccacaagtaccacatctaacatcacggcttccatgagcaca |
12215438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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