View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_2 (Length: 499)
Name: NF1504_1D_low_2
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 32694822 - 32694497
Alignment:
| Q |
1 |
ttttattggactaaaatttcttcaatatgagagaactcaaaaaatgtattgaattaaagaagagctttttagggttttagagattttgaaatctattata |
100 |
Q |
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| T |
32694822 |
ttttattggactaaaatttcttcaatatgagagaactcaaaaaatgtatcgaattaaagaagagctttttagggttttagagattttgaaatctattata |
32694723 |
T |
|
| Q |
101 |
cttctctttaaacaaagcctaagcaattccaaacaatgtccctttacttggctagcttaggaacaccacttaagtaagaataagaaattatttacattac |
200 |
Q |
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| T |
32694722 |
cttctctttaaacaaagcctaagcaattccaaacaatgtccctttacttggctagcttaggaagaccacttaagtaagaataagaaattatttacattac |
32694623 |
T |
|
| Q |
201 |
aagaaacccaaccaatttgtaaaaagaaagacaaaaacaaatccagccaataaannnnnnnnnnnctttcttaaataacaatttgattcatatataaatc |
300 |
Q |
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| T |
32694622 |
aagaaacccaaccaatttgtaaaaagaaagacaaaaacaaatccagccaataa--ttttttttttctttctt-aataacaatttgattcatatataaatc |
32694526 |
T |
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| Q |
301 |
gaatattaaaaatatacaagattaaaaat |
329 |
Q |
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| T |
32694525 |
gaatattaaaaatatacaagattaaaaat |
32694497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 323 - 443
Target Start/End: Complemental strand, 32694473 - 32694357
Alignment:
| Q |
323 |
taaaaattaagagtgtgtggttaattaattaccagatcatgctggcagcttcagcctctcaaaccaacataacatatatacatacttgtgaatgaatgaa |
422 |
Q |
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| T |
32694473 |
taaaaattaagagtgtgtggttaattaattaccagatcatgctggcagcttcagcctctcaaaccaacataac----atacatacttgtgaatgaatgaa |
32694378 |
T |
|
| Q |
423 |
gaaacattcatgatgatagat |
443 |
Q |
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| T |
32694377 |
gaaacattcatgatgatagat |
32694357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 32694333 - 32694292
Alignment:
| Q |
437 |
gatagatagatatatagatgcagacgtagaaattgacaaaaa |
478 |
Q |
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| T |
32694333 |
gatagatagatatatagatgcagacgtagaaattgacaaaaa |
32694292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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