View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504_1D_low_27 (Length: 321)
Name: NF1504_1D_low_27
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 57 - 315
Target Start/End: Original strand, 43224045 - 43224306
Alignment:
| Q |
57 |
gggaaatggaaggcacatcaaagcaag---nnnnnnngaagaagaagcataatgaaaggtgcaagcaacaatatagagattagaaaacttacctaagact |
153 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224045 |
gggaaatggaaggcacatcaaagcaagaaaaaaagaagaagaagaagcataatgaaaggtgcaagcaacaatatagagattagaaaacttacctaagact |
43224144 |
T |
|
| Q |
154 |
tagactctgctagtatagagagttactatccttcgaaaatagtacaattctcaccaaattttctgtgttaatgtagggagtttttatagaattttcgtaa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43224145 |
tagactctgctagtatagagagttactatccttcgaaaatagtacaattctcaccaaattttctgtgttaatgtagggagtttttatagaattttcttaa |
43224244 |
T |
|
| Q |
254 |
tgcagtaaatataccgaatagaataaaagaaagaaaaataatttatcatgtagggtatatat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43224245 |
tgcagtaaatataccgaatagaataaaagaaagaaaaataatttatcatatagggtatatat |
43224306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University