View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_28 (Length: 319)
Name: NF1504_1D_low_28
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 302
Target Start/End: Original strand, 32561528 - 32561806
Alignment:
| Q |
23 |
attaacatcgttgatgtgtcagtatcgagtgtttttgctccataggttgatagagcctgtattatcattgttacattacaactcatactttaaatttatg |
122 |
Q |
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| T |
32561528 |
attaacatcgttgatgtgtcagtatcgagtgtttttgctccataggttgatagagcctgtattatcattgttacattacaactcatactttaaatttatg |
32561627 |
T |
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| Q |
123 |
tagagaatttgataaatgaatacagttgttggaacttaggtacagtttgtcaaaaattgaattttaatattttattcaaagcatatgttcatttttcatg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32561628 |
tagagaatttgataaatgaatacagttgttggaacttaggtacagtttgtcaaaaattgaattttaatattttattcaaagcatatgttcatttttcatg |
32561727 |
T |
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| Q |
223 |
cttcaaatgtttgactttggttgcttttcttatgtcnnnnnnnnnncctcagctggttgattttgtctcacatgtgatgt |
302 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32561728 |
cttcaaatgtttgactttggttgcttttcttatgt-atttttttttcctcagctggttgattttgtctcacatgtgatgt |
32561806 |
T |
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