View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_29 (Length: 314)
Name: NF1504_1D_low_29
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 17032020 - 17031883
Alignment:
| Q |
20 |
agttcttcttaaatgaagtgtttgggggaactcttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagact |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17032020 |
agttcttcttaaatgaagtgtttgggggaactcttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagact |
17031921 |
T |
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| Q |
120 |
ttaggacaagttgtgtgttcaattacagaatatgtaag |
157 |
Q |
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| T |
17031920 |
ttaggacaagttgtatgttcaattacagaatatgtaag |
17031883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 17002690 - 17002553
Alignment:
| Q |
20 |
agttcttcttaaatgaagtgtttgggggaactcttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagact |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17002690 |
agttcttcttaaatgaagtgtttgggggaactcttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagtgt |
17002591 |
T |
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| Q |
120 |
ttaggacaagttgtgtgttcaattacagaatatgtaag |
157 |
Q |
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| T |
17002590 |
ttaggacaagctgcgtgttcaattaccaaatatgtaag |
17002553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 17031818 - 17031740
Alignment:
| Q |
222 |
gataaaggttcacctttgaaccattttttaagagtccatatcagacacacctctaataaattctgtgtttttgtgatgt |
300 |
Q |
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| T |
17031818 |
gataaaggttcacctttgaaccattttttaagagtccatatcagacacacctctaataaattctgtgtttttgtgatgt |
17031740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 17042560 - 17042434
Alignment:
| Q |
20 |
agttcttcttaaatgaagtgtttgggggaactcttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagact |
119 |
Q |
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| T |
17042560 |
agttcttcttaaatgaagtgtttgggggaactcttgggttcaaccaacacttataaatcatcaaacactaacaagctctaaattcacgtgatcaatgtgt |
17042461 |
T |
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| Q |
120 |
ttaggacaagttgtgtgttcaattaca |
146 |
Q |
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| T |
17042460 |
ttaggacaagttgtgtgctcaattaca |
17042434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 17025073 - 17025014
Alignment:
| Q |
32 |
atgaagtgtttgggggaactcttgggttcaaccaacacctatccatcatcaaataccaac |
91 |
Q |
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| T |
17025073 |
atgaagtgtttgggggaactcttgggttcaaccaacacctatccatcatcaaataccaac |
17025014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 17036734 - 17036655
Alignment:
| Q |
20 |
agttcttcttaaatgaagtgtttgggggaactcttgggttcaaccaacacctatccatcatcaaataccaacaaactcca |
99 |
Q |
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| T |
17036734 |
agttcttcatcaatgaagtgtttgggggaactcttgggttcaaccagcaccaatacatcattaaataccaacaagctcca |
17036655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 17048412 - 17048351
Alignment:
| Q |
32 |
atgaagtgtttgggggaactcttgggttcaaccaacacctatccatcatcaaataccaacaa |
93 |
Q |
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| T |
17048412 |
atgaagtgtttgggggaactcttgggttcaaccagcacctatccatcatcaaacactaacaa |
17048351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 16982552 - 16982518
Alignment:
| Q |
32 |
atgaagtgtttgggggaactcttgggttcaaccaa |
66 |
Q |
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| T |
16982552 |
atgaagtgtttgggggaactcttgggttcaaccaa |
16982518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 17082427 - 17082391
Alignment:
| Q |
20 |
agttcttcttaaatgaagtgtttgggggaactcttgg |
56 |
Q |
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||||||| || |||||||||||||||||||||||||| |
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| T |
17082427 |
agttcttgttcaatgaagtgtttgggggaactcttgg |
17082391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 17097303 - 17097267
Alignment:
| Q |
20 |
agttcttcttaaatgaagtgtttgggggaactcttgg |
56 |
Q |
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||||||| || |||||||||||||||||||||||||| |
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| T |
17097303 |
agttcttgttcaatgaagtgtttgggggaactcttgg |
17097267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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