View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_3 (Length: 491)

Name: NF1504_1D_low_3
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_3
NF1504_1D_low_3
[»] chr5 (12 HSPs)
chr5 (24-277)||(19805751-19806005)
chr5 (278-488)||(19806735-19806945)
chr5 (47-215)||(19970009-19970177)
chr5 (349-415)||(13712271-13712337)
chr5 (350-474)||(19969602-19969729)
chr5 (47-105)||(1348343-1348401)
chr5 (354-488)||(17377259-17377399)
chr5 (433-480)||(20111942-20111989)
chr5 (360-401)||(1348047-1348088)
chr5 (49-109)||(26535614-26535674)
chr5 (436-479)||(9618923-9618966)
chr5 (49-87)||(13712824-13712862)
[»] chr3 (7 HSPs)
chr3 (351-411)||(24890843-24890903)
chr3 (41-99)||(32225896-32225954)
chr3 (351-488)||(24912761-24912901)
chr3 (433-488)||(32226544-32226599)
chr3 (327-402)||(32242140-32242215)
chr3 (29-98)||(32225358-32225427)
chr3 (348-400)||(32226456-32226508)
[»] chr2 (1 HSPs)
chr2 (353-480)||(15784561-15784688)
[»] scaffold0009 (1 HSPs)
scaffold0009 (432-488)||(40586-40642)
[»] chr6 (2 HSPs)
chr6 (327-485)||(16258474-16258635)
chr6 (47-100)||(31088865-31088918)
[»] chr1 (1 HSPs)
chr1 (47-84)||(26053732-26053769)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 24 - 277
Target Start/End: Original strand, 19805751 - 19806005
Alignment:
Q  24 taatattcatttggaaaatatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaaacaacaaccaat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19805751 taatattcatttggaaaatatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaaacaacaaccaat 19805850  T
Q  124 gttacaacgggagggaactttaaatccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaatttataatgtccgatttc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19805851 gttacaacgggagggaactttaaatccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaatttataatgtccgatttc 19805950  T
Q  224 taagtgtacacgaggtatgatac-tttatcgtcaatattatatgagctaaatttt 277  Q
    || ||||||| |||||||||||| |||||| ||||||||||||||||| ||||||    
T  19805951 tacgtgtacatgaggtatgatacttttatcatcaatattatatgagcttaatttt 19806005  T

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Target: chr5; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 278 - 488
Target Start/End: Original strand, 19806735 - 19806945
Alignment:
Q  278 gatacattaagtcaaatattttcatttcgactaatcttatgtgtgactttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaag 377  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19806735 gatacattaagtcaaatattttcatttcgactaaccttatgtgtgactttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaag 19806834  T
Q  378 gctttccagtgtttgaaaacttaaccgaccttcatctatcttggtgcattggcgctcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaa 477  Q
    ||||| | ||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19806835 gcttttccgtgtttgaaaacttaactgaccttcaactatcttggtgcaatggcgctcatgattgggatgaggtagtgaaaatgctccaaaattgtcccaa 19806934  T
Q  478 actccaaactc 488  Q
    |||||||||||    
T  19806935 actccaaactc 19806945  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 19970177 - 19970009
Alignment:
Q  47 aggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaaacaacaaccaatgttacaacgggagggaactttaa 146  Q
    ||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||| || |||| |  |||   || |||||||| |||||||| | |||||    
T  19970177 aggatctcatgaaacttttttcggggtgtcccatgttggagaatttgaaaactatatgtgttgatgcaaatgccgatgttacagcgggagggtattttaa 19970078  T
Q  147 atccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaatttataatgt 215  Q
    | |||||||||| |||| |||||| ||||| |  ||||||||  ||||| | |||||| ||||||||||    
T  19970077 acccttatccaaattgatcaatgcagatatcaatttattcgaagttccgcttagagcagtttataatgt 19970009  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 415
Target Start/End: Complemental strand, 13712337 - 13712271
Alignment:
Q  349 caatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatcta 415  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  13712337 caatgaagaaatcaattcatattacaaaggctttcctgtgtttgaaaacttaaccaaccttcatcta 13712271  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 474
Target Start/End: Complemental strand, 19969729 - 19969602
Alignment:
Q  350 aatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggtgcatt---ggcgctcatgactgggatg 446  Q
    |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||| | || |  |||| |||| | | |   |||  |||||| ||||| |    
T  19969729 aatgcagaaatcaattcatattacaaagactttccagtgtttggaaacttaaccaaactgctactatgttgggggaatgaaggcattcatgagtgggacg 19969630  T
Q  447 aggtagtgaaaatgctccaaaattgtcc 474  Q
    ||||||||||||| ||||||||||||||    
T  19969629 aggtagtgaaaatactccaaaattgtcc 19969602  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 1348401 - 1348343
Alignment:
Q  47 aggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatat 105  Q
    ||||| ||||||||||||| |||||||||||   |||||||||||||||||||||||||    
T  1348401 aggatctcatgaaacttctgtctgggtgtcctcaattggagaatttgaaaactagatat 1348343  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 488
Target Start/End: Original strand, 17377259 - 17377399
Alignment:
Q  354 aagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggt------gcattggcgctcatgactgggatga 447  Q
    |||||||||||| || | ||||| || ||||  ||||||||||| |||||   ||||| ||||||||||      ||||| ||| |||||||||||| |     
T  17377259 aagaaatcaattcatttgacaaaagccttcccatgtttgaaaacataaccagacttcaactatcttggtctccaagcattagcgttcatgactgggaggt 17377358  T
Q  448 ggtagtgaaaatgctccaaaattgtcccaaactccaaactc 488  Q
    |||| |||||||||| || |||||||||||||| |||||||    
T  17377359 ggtattgaaaatgctacagaattgtcccaaacttcaaactc 17377399  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 480
Target Start/End: Original strand, 20111942 - 20111989
Alignment:
Q  433 tcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaact 480  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||||    
T  20111942 tcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaact 20111989  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 1348088 - 1348047
Alignment:
Q  360 tcaatttatattacaaaggctttccagtgtttgaaaacttaa 401  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  1348088 tcaattcatattacaaaggctttcccgtgtttgaaaacttaa 1348047  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 26535614 - 26535674
Alignment:
Q  49 gatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgtta 109  Q
    ||||||||||||||| ||| ||||||||||| ||||||| ||||||  |||| ||||||||    
T  26535614 gatttcatgaaacttgtttatgggtgtcccaaattggaggatttgagtactatatatgtta 26535674  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 479
Target Start/End: Original strand, 9618923 - 9618966
Alignment:
Q  436 tgactgggatgaggtagtgaaaatgctccaaaattgtcccaaac 479  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||    
T  9618923 tgactgggatgatgtaatgaaaatgctccaaagttgtcccaaac 9618966  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 13712862 - 13712824
Alignment:
Q  49 gatttcatgaaacttctttctgggtgtcccatattggag 87  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  13712862 gatttcatgaaccttctctctgggtgtcccatattggag 13712824  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 24890843 - 24890903
Alignment:
Q  351 atgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttca 411  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||    
T  24890843 atgaagaaatcaattcatattacaaaggttttcctgtgtttgaaaacttaaccgaacttca 24890903  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 32225896 - 32225954
Alignment:
Q  41 atatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaact 99  Q
    ||||||||||||| | ||||||| | ||||||||||||||||| ||| |||||||||||    
T  32225896 atatcgaggatttaaagaaacttatatctgggtgtcccatattagaggatttgaaaact 32225954  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 488
Target Start/End: Original strand, 24912761 - 24912901
Alignment:
Q  351 atgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatctt-ggtgca--ttggcgctcatgactgggatga 447  Q
    ||||||||||||||| |||||| ||||| |||||  |||||||||||| |||||| ||||| || | || ||| ||    |||  |||||| || |||||    
T  24912761 atgaagaaatcaattcatattataaaggttttcctatgtttgaaaactgaaccgatcttcaactgtgttaggttcaagaaggcattcatgattgagatga 24912860  T
Q  448 ggtagtgaaaatgctccaaaattgtcccaaactccaaactc 488  Q
    |||||||||||||||  |  ||||||||||||| |||||||    
T  24912861 ggtagtgaaaatgctttaggattgtcccaaacttcaaactc 24912901  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 488
Target Start/End: Original strand, 32226544 - 32226599
Alignment:
Q  433 tcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactc 488  Q
    |||||| ||| ||||||||||| ||||||||||  ||||||||||||| |||||||    
T  32226544 tcatgattggtatgaggtagtgcaaatgctccattattgtcccaaacttcaaactc 32226599  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 402
Target Start/End: Complemental strand, 32242215 - 32242140
Alignment:
Q  327 tgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaac 402  Q
    ||||||||| || || |||  ||||| |||||||||||| ||||||| |||||| ||  |||||||||||||||||    
T  32242215 tgcagatggggaaaagtctccccaatcaagaaatcaattcatattaccaaggctatcatgtgtttgaaaacttaac 32242140  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 32225427 - 32225358
Alignment:
Q  29 ttcatttggaaaatatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaac 98  Q
    ||||||||||  ||||||||||||| | ||||||| | |||| || ||||||||| ||| ||||||||||    
T  32225427 ttcatttggatgatatcgaggatttaaagaaacttatatctgagtttcccatattagaggatttgaaaac 32225358  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 32226456 - 32226508
Alignment:
Q  348 ccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaactta 400  Q
    ||||| |||||||||||| ||||||| |||||| ||  |||||||||||||||    
T  32226456 ccaatcaagaaatcaattcatattaccaaggctatcatgtgtttgaaaactta 32226508  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 480
Target Start/End: Original strand, 15784561 - 15784688
Alignment:
Q  353 gaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttgg-tgcattggcgctcatgactgggatgaggta 451  Q
    ||||||||||||| |||| |||| || ||||| ||||||| |||||||| ||| ||||| |||| |||| | || ||||  ||||||||  | |||||||    
T  15784561 gaagaaatcaattcatataacaacggatttcctgtgtttggaaacttaatcgaacttcaactatgttggattca-tggcattcatgactatgttgaggta 15784659  T
Q  452 gtgaaaatgctccaaaattgtcccaaact 480  Q
    ||||||||||| || |||||||| |||||    
T  15784660 gtgaaaatgctacagaattgtccaaaact 15784688  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 488
Target Start/End: Original strand, 40586 - 40642
Alignment:
Q  432 ctcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactc 488  Q
    |||||||||||  ||||||| ||||||||||||| |||||||| ||||| |||||||    
T  40586 ctcatgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaaactc 40642  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 485
Target Start/End: Complemental strand, 16258635 - 16258474
Alignment:
Q  327 tgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggt---g 423  Q
    ||||||||| || || |||  ||||| |||||||||||| ||||||| ||||||  || ||||||||||||||||  || ||||  |||| |||||        
T  16258635 tgcagatggggaaaagtctccccaatcaagaaatcaattcatattaccaaggctgccctgtgtttgaaaacttaattgaacttcgactattttggtttga 16258536  T
Q  424 cattggcgctcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaa 485  Q
     | | ||  |||||| ||| ||||||||||| |||||||||| |||||||| ||||| ||||    
T  16258535 taattgcattcatgattggtatgaggtagtgcaaatgctccataattgtccgaaacttcaaa 16258474  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 31088865 - 31088918
Alignment:
Q  47 aggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaacta 100  Q
    ||||||||||||||||| | ||||||||||||  ||||||| ||| ||||||||    
T  31088865 aggatttcatgaaacttatctctgggtgtcccgaattggaggattggaaaacta 31088918  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 26053769 - 26053732
Alignment:
Q  47 aggatttcatgaaacttctttctgggtgtcccatattg 84  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  26053769 aggatttcatgaaacttctttttgggtgtcccaaattg 26053732  T

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