View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_30 (Length: 308)

Name: NF1504_1D_low_30
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_30
NF1504_1D_low_30
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-287)||(75026-75291)
[»] chr6 (12 HSPs)
chr6 (22-262)||(29471870-29472107)
chr6 (22-185)||(29767133-29767296)
chr6 (22-255)||(29662703-29662935)
chr6 (22-255)||(29689157-29689393)
chr6 (28-172)||(29711720-29711864)
chr6 (22-256)||(29671265-29671502)
chr6 (22-185)||(29718337-29718503)
chr6 (22-182)||(29755629-29755789)
chr6 (22-183)||(29799859-29800020)
chr6 (40-119)||(29741318-29741397)
chr6 (22-183)||(28487446-28487608)
chr6 (215-256)||(29767329-29767370)
[»] scaffold0012 (1 HSPs)
scaffold0012 (22-268)||(208634-208883)
[»] chr3 (1 HSPs)
chr3 (22-172)||(618871-619021)
[»] chr8 (1 HSPs)
chr8 (38-185)||(12592388-12592538)
[»] chr1 (1 HSPs)
chr1 (98-180)||(5918325-5918407)


Alignment Details
Target: scaffold0007 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 75291 - 75026
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75291 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 75192  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtgacatacgtatcttctcatcatatgt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  75191 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtcacatacgtatcttctcatcatatgt 75092  T
Q  222 atagaaaaatgtattgccattgatgatcactcttagaggacattgaggatctgtcaatggagatac 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75091 atagaaaaatgtattgccattgatgatcactcttagaggacattgaggatctgtcaatggagatac 75026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 29472107 - 29471870
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||    
T  29472107 atatccttcatgttacttttctttttcaatacatggattccactatacatgaatgggaacccaaagtcaacctctgcatggttccacttattttctaaaa 29472008  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtgacatacgtatcttctcatcatatgt 221  Q
    |||||||||||||| |||  || ||||||||| ||| |||||||||||||| || |||||||| ||    | |||| | |||| | || ||| |||   |    
T  29472007 gtgctttgtccatattattattcaatttttccatttgcatatgaaaaagatgtagatgatacactt---ctggtgataaacgtttattttcaccatgcct 29471911  T
Q  222 atagaaaaatgtattgccattgatgatcactcttagaggac 262  Q
    ||||||||||||||  ||||||||||||||||||| |||||    
T  29471910 atagaaaaatgtatcaccattgatgatcactcttacaggac 29471870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 29767133 - 29767296
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  29767133 atatctttcatgctacttttctctttcaatacatggattccactaaacatgaatgggaatccaaagtcaacctctgcatggttccatttattttctaaaa 29767232  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacat 185  Q
    |||| ||||||||| |||| ||||| | |||| ||| ||||||||||||||  |||||||||||    
T  29767233 gtgccttgtccatattatcattgaagtattccatttgcatatgaaaaagatgcaaatgatacat 29767296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 29662703 - 29662935
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    ||||| |||||| |||||||||||||||||| ||||||||||| || |  ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  29662703 atatcattcatgttacttttctctttcaatacatggattccac-attctggaatgggaatccaaagtcaacctctgcatggttccacttattttctaaaa 29662801  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtgacatacgtatcttctcatcatatgt 221  Q
    ||||||||||||||  ||| |||||||||||  ||| |||||||||||||| |||||||||| ||| | |  |||||||| |||   ||||| || || |    
T  29662802 gtgctttgtccatatcatcattgaatttttcagtttgcatatgaaaaagatgtaaatgatacgtttcccgcagtgacataggtagaatctcaccacattt 29662901  T
Q  222 atagaaaaatgtattgccattgatgatcactctt 255  Q
    ||||| ||||||||  |||||||||| |||||||    
T  29662902 atagacaaatgtatatccattgatgaccactctt 29662935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 29689157 - 29689393
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  29689157 atatccttcatgttactcttctctttcaatacatggattccactaaacatgaatgggaatccaaagtcaacctctgcatggttccatttattttctaaaa 29689256  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtg---acatacgtatcttctcatcata 218  Q
    ||||||| |||||| || | ||||| | ||||  || ||||||||||||||  ||||||||  | | | ||||||   || ||   ||||||  | |||     
T  29689257 gtgctttatccatattaccattgaagtattccacttgcatatgaaaaagatgcaaatgatatgtgtccggtcgtgaacacctatcaatcttcctaccatg 29689356  T
Q  219 tgtatagaaaaatgtattgccattgatgatcactctt 255  Q
    ||||||||||||||||||| | |||||||||||||||    
T  29689357 tgtatagaaaaatgtattgtcgttgatgatcactctt 29689393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 29711720 - 29711864
Alignment:
Q  28 ttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctt 127  Q
    |||||| |||||||||||||||||| |||||||||||||| |  ||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  29711720 ttcatgttacttttctctttcaatacatggattccactattctggaaagggaatccaaagtcaacctctgcatggttccacttattttctaaaagtgctt 29711819  T
Q  128 tgtccatagtatcgttgaatttttcccttttcatatgaaaaagat 172  Q
    |||| ||| |||| ||||| |||||| ||| || |||||||||||    
T  29711820 tgtctatattatcattgaaattttccatttgcaaatgaaaaagat 29711864  T

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Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 29671265 - 29671502
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    |||||||||||| |||||||||||||| ||| ||| |||||||| | |  ||||||  ||||||| |||| |||||||||||||||| ||||||| ||||    
T  29671265 atatccttcatgttacttttctctttcgatacatgaattccacttttctggaatggtaatccaaaatcaacctctgcatggttccacatattttcaaaaa 29671364  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtga---catacgtatcttctcatcata 218  Q
    || |||| |||||| |||| || || |||||| ||||||||||||||||||  ||||||||||| |||||  ||||   | |||  ||||||  | |||     
T  29671365 gtactttttccatattatcattaaagttttccattttcatatgaaaaagatgcaaatgatacatattcagcggtgatttcgtacccatcttcaaaccatc 29671464  T
Q  219 tgtatagaaaaatgtattgccattgatgatcactctta 256  Q
    ||| |||| ||||||||| |||||||||||||||||||    
T  29671465 tgtgtagataaatgtatttccattgatgatcactctta 29671502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 29718337 - 29718503
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggat---ccaaagtcaagctctgcatggttccacttattttcta 118  Q
    ||||||| ||||||| |||| |||||||||| ||||| |||||||||||||||||  ||    ||||| | || ||||||||||||||||||||||||||    
T  29718337 atatcctccatgctatttttttctttcaatacatggactccactatacatgaatgcagagacaccaaaataaatctctgcatggttccacttattttcta 29718436  T
Q  119 aaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacat 185  Q
    ||||||||||||||||| |||| ||||| || ||| ||| ||||||||||||||  |||||||||||    
T  29718437 aaagtgctttgtccatattatcattgaagttctccgtttgcatatgaaaaagatgcaaatgatacat 29718503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 29755629 - 29755789
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    |||||||||| | || ||||||||||||||| |||||||||||| |  | ||||  | ||||||||  || ||| ||||||||||||||||||||| |||    
T  29755629 atatccttcaagttaattttctctttcaatacatggattccacttttaaggaatttgaatccaaagagaacctccgcatggttccacttattttctgaaa 29755728  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgata 182  Q
    |||||||||||||| |||| ||||| |||||| ||| ||||||||||||||  ||||||||    
T  29755729 gtgctttgtccatattatcattgaagttttccatttgcatatgaaaaagatgcaaatgata 29755789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 29799859 - 29800020
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    |||||||||||| |||||||  ||||||||| |||||||||||| |    ||||  | ||||||||| || || ||||||||||||||||||||||||||    
T  29799859 atatccttcatgttacttttagctttcaatacatggattccacttttatggaatttgaatccaaagtaaacctttgcatggttccacttattttctaaaa 29799958  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatac 183  Q
    ||| ||| |||||| |||| ||||| |||||| ||| |||||| |||||||  |||||||||    
T  29799959 gtgatttatccatattatcattgaagttttccgtttgcatatggaaaagatgcaaatgatac 29800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 29741318 - 29741397
Alignment:
Q  40 ttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaa 119  Q
    ||||||||||||| ||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  29741318 ttctctttcaatacatggattccgctatacatgaacgggaatccaaagtcaacctctgcatggttccacttattttctaa 29741397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 28487446 - 28487608
Alignment:
Q  22 atatccttcatgctacttttc-tctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaa 120  Q
    |||||||||||| |||||||  |||||||||| |||||||||||| |    ||||  | ||||||||| || || |||||||||||||||||||||||||    
T  28487446 atatccttcatgttacttttagtctttcaatacatggattccacttttatggaatttgaatccaaagtaaacctttgcatggttccacttattttctaaa 28487545  T
Q  121 agtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatac 183  Q
    |||| ||| |||||| |||| ||||| |||||| ||| |||||| |||||||  |||||||||    
T  28487546 agtgatttatccatattatcattgaagttttccgtttgcatatggaaaagatgcaaatgatac 28487608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 29767329 - 29767370
Alignment:
Q  215 catatgtatagaaaaatgtattgccattgatgatcactctta 256  Q
    ||| |||||||||||||||||| || ||||||||||||||||    
T  29767329 catgtgtatagaaaaatgtatttccgttgatgatcactctta 29767370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 268
Target Start/End: Original strand, 208634 - 208883
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    ||||| |||||||||||| |||||||||||| |||||||||||| | || ||||| |  |||||| |||||||||||||| ||||||||||||||| | |    
T  208634 atatcgttcatgctacttctctctttcaatacatggattccactttccaggaatgagagtccaaaatcaagctctgcatgattccacttattttctgaga 208733  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcg---tgacatacgtatcttctcatcata 218  Q
    |||||||||||||| | || ||||| |||||| ||| ||||||||||||||  ||||||||||| | | | ||   |||| ||  |||||||  |||||     
T  208734 gtgctttgtccatattttcattgaagttttccatttgcatatgaaaaagatgcaaatgatacatgtccggccgtgatgacctatctatcttcgaatcatg 208833  T
Q  219 tgtatagaaaaatgtattgccattgatgatcactcttagaggacattgag 268  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  208834 tgtatagaaaaatgtattgccattgatgaccactcttacaggacgttgag 208883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 619021 - 618871
Alignment:
Q  22 atatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaa 121  Q
    ||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  619021 atatctttcatgttacttttctcttccaatacatggattccactatacatgaatgggaatccaaagtcaacctctgcatgattccacttattttctaaaa 618922  T
Q  122 gtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagat 172  Q
    |||||||||||||| |||| ||||| |  | | ||| ||||||||||||||    
T  618921 gtgctttgtccatattatcattgaagtacttcatttgcatatgaaaaagat 618871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 12592538 - 12592388
Alignment:
Q  38 ttttctctttcaatatatggattccactatacatgaatggggat---ccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccat 134  Q
    |||| |||||||||| |||||||||||||||||||||||  ||    ||||| | || ||||||||||||||||||||||||||||||||||||||||||    
T  12592538 ttttatctttcaatacatggattccactatacatgaatgcagagacaccaaaataaacctctgcatggttccacttattttctaaaagtgctttgtccat 12592439  T
Q  135 agtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacat 185  Q
    | |||| ||||| || ||| ||| ||||||||||||||  |||||||||||    
T  12592438 attatcattgaagttctccatttgcatatgaaaaagatgcaaatgatacat 12592388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 5918325 - 5918407
Alignment:
Q  98 catggttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatga 180  Q
    |||||||||||| ||||||||||||||||   |||| |  ||| |||||||||||  ||| ||||||||||| || |||||||    
T  5918325 catggttccactcattttctaaaagtgctgcatccacatcatcattgaatttttctatttgcatatgaaaaatatgtaaatga 5918407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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