View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_31 (Length: 306)

Name: NF1504_1D_low_31
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_31
NF1504_1D_low_31
[»] chr6 (8 HSPs)
chr6 (44-286)||(21535678-21535920)
chr6 (44-286)||(18132989-18133231)
chr6 (44-286)||(18131783-18132025)
chr6 (44-244)||(21395592-21395792)
chr6 (172-286)||(7033443-7033557)
chr6 (45-149)||(7033339-7033443)
chr6 (56-156)||(4303040-4303140)
chr6 (44-150)||(16189671-16189779)
[»] chr5 (11 HSPs)
chr5 (44-286)||(22950233-22950475)
chr5 (44-286)||(19934526-19934768)
chr5 (44-271)||(29526039-29526267)
chr5 (44-271)||(29527252-29527480)
chr5 (44-283)||(39701589-39701832)
chr5 (44-283)||(39702819-39703062)
chr5 (44-263)||(41050926-41051152)
chr5 (44-153)||(19139374-19139483)
chr5 (44-156)||(35144500-35144613)
chr5 (190-245)||(33215264-33215321)
chr5 (127-156)||(37473631-37473660)
[»] chr3 (15 HSPs)
chr3 (44-286)||(54994579-54994821)
chr3 (44-276)||(7197692-7197928)
chr3 (44-222)||(45826153-45826331)
chr3 (44-286)||(2386293-2386543)
chr3 (46-220)||(592537-592711)
chr3 (44-220)||(48637539-48637715)
chr3 (44-263)||(40976771-40977001)
chr3 (71-206)||(51274436-51274571)
chr3 (1-42)||(39983852-39983893)
chr3 (1-42)||(39984913-39984954)
chr3 (1-41)||(41968296-41968336)
chr3 (190-245)||(25184672-25184729)
chr3 (96-156)||(16772790-16772848)
chr3 (95-155)||(49987228-49987286)
chr3 (126-154)||(54886899-54886927)
[»] chr1 (19 HSPs)
chr1 (44-286)||(8089720-8089962)
chr1 (44-286)||(10582670-10582912)
chr1 (44-286)||(10583876-10584118)
chr1 (44-261)||(49122123-49122340)
chr1 (44-286)||(49123232-49123474)
chr1 (71-286)||(49121909-49122124)
chr1 (44-220)||(8788534-8788710)
chr1 (72-245)||(23540999-23541176)
chr1 (45-159)||(23540880-23540998)
chr1 (44-156)||(3815222-3815335)
chr1 (84-148)||(19950378-19950442)
chr1 (94-156)||(36346591-36346653)
chr1 (1-42)||(8090150-8090191)
chr1 (1-42)||(27962726-27962767)
chr1 (1-41)||(172969-173009)
chr1 (1-42)||(48907410-48907451)
chr1 (106-155)||(17826222-17826271)
chr1 (93-155)||(30038108-30038170)
chr1 (114-156)||(40670604-40670646)
[»] chr7 (7 HSPs)
chr7 (44-286)||(6081171-6081413)
chr7 (44-286)||(6082378-6082620)
chr7 (44-156)||(17901159-17901273)
chr7 (54-157)||(27021363-27021464)
chr7 (1-42)||(13077530-13077571)
chr7 (1-42)||(13078591-13078632)
chr7 (95-156)||(30640722-30640782)
[»] scaffold0011 (2 HSPs)
scaffold0011 (44-286)||(205590-205832)
scaffold0011 (44-220)||(211667-211843)
[»] chr4 (9 HSPs)
chr4 (44-286)||(11962000-11962242)
chr4 (44-214)||(3567008-3567178)
chr4 (128-213)||(45638746-45638831)
chr4 (1-41)||(54938938-54938978)
chr4 (96-159)||(27869371-27869434)
chr4 (59-101)||(45638710-45638752)
chr4 (93-155)||(32992387-32992448)
chr4 (93-143)||(36982313-36982362)
chr4 (190-245)||(25542486-25542543)
[»] chr2 (14 HSPs)
chr2 (44-286)||(33789849-33790094)
chr2 (44-250)||(12324855-12325068)
chr2 (118-245)||(18955376-18955505)
chr2 (1-42)||(4517352-4517393)
chr2 (1-42)||(14684556-14684597)
chr2 (1-42)||(14685617-14685658)
chr2 (1-42)||(21306412-21306453)
chr2 (1-42)||(21307469-21307510)
chr2 (1-42)||(30246458-30246499)
chr2 (1-42)||(40421380-40421421)
chr2 (1-42)||(40422439-40422480)
chr2 (95-155)||(13218743-13218802)
chr2 (127-171)||(3302449-3302494)
chr2 (95-151)||(42599698-42599753)
[»] scaffold0227 (2 HSPs)
scaffold0227 (44-286)||(12195-12436)
scaffold0227 (44-263)||(11065-11288)
[»] scaffold0018 (1 HSPs)
scaffold0018 (69-286)||(177889-178106)
[»] scaffold0026 (2 HSPs)
scaffold0026 (44-220)||(80753-80929)
scaffold0026 (49-220)||(79557-79728)
[»] chr8 (13 HSPs)
chr8 (44-250)||(40254410-40254615)
chr8 (47-155)||(21661182-21661290)
chr8 (44-246)||(2411062-2411264)
chr8 (44-118)||(26246969-26247043)
chr8 (1-42)||(13255565-13255606)
chr8 (1-42)||(45036272-45036313)
chr8 (93-155)||(5176597-5176658)
chr8 (93-151)||(26187541-26187599)
chr8 (1-42)||(6540687-6540728)
chr8 (71-171)||(13260936-13261037)
chr8 (190-245)||(36241268-36241325)
chr8 (122-154)||(19729212-19729244)
chr8 (96-156)||(43506411-43506470)
[»] scaffold0063 (1 HSPs)
scaffold0063 (124-155)||(33903-33934)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 21535920 - 21535678
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  21535920 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 21535821  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21535820 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagctgttacatagaag 21535721  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  21535720 tttagtagacagcaattactacatacaagtaacagttacttat 21535678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 44 - 286
Target Start/End: Original strand, 18132989 - 18133231
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  18132989 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 18133088  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  18133089 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaag 18133188  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  18133189 tttagtagacagcaattactacacacaagtaacagttacttat 18133231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 44 - 286
Target Start/End: Original strand, 18131783 - 18132025
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||    
T  18131783 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccttccaagtattcgagagc 18131882  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  18131883 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaag 18131982  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  18131983 tttagtagacagcaattactacacacaagtaacagttacttat 18132025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 44 - 244
Target Start/End: Original strand, 21395592 - 21395792
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  21395592 gatagaaactgatatcaaaatataaactaacagtaagattataatataatcccaagaaattcaagagtcttggttgtctcccctccaagaattcgagagc 21395691  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  21395692 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaaatcctatggctgttacatagaag 21395791  T
Q  244 t 244  Q
    |    
T  21395792 t 21395792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 7033443 - 7033557
Alignment:
Q  172 caatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaagtttagtaaacagcaattactacatacaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| ||||    
T  7033443 caatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaagtttagtagacaacaattactacacacaa 7033542  T
Q  272 gtaacggttacttat 286  Q
    ||||| |||||||||    
T  7033543 gtaacagttacttat 7033557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 7033339 - 7033443
Alignment:
Q  45 ataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagct 144  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  7033339 ataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgaaagct 7033438  T
Q  145 tggtc 149  Q
    |||||    
T  7033439 tggtc 7033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 4303140 - 4303040
Alignment:
Q  56 tatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 155  Q
    |||||||||  ||| ||||| ||| | ||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4303140 tatcaaaatccaaattaatattaataatacaatagattcccaagaaattctagagtcttggttctctcccctccaagaattcgagagcttggtctctccc 4303041  T
Q  156 t 156  Q
    |    
T  4303040 t 4303040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 16189779 - 16189671
Alignment:
Q  44 gataggaaccgatatcaaaa--tataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgaga 141  Q
    ||||| ||| ||||||||||  |||||| ||||||||| ||||||||| ||||||| | || |  ||||  |||||||||||||||||||||||||||||    
T  16189779 gatagaaactgatatcaaaacatataaattaatagtaatattacaatagaatcccatggaaattgagagtgttggttctctcccctccaagaattcgaga 16189680  T
Q  142 gcttggtct 150  Q
    |||||||||    
T  16189679 gcttggtct 16189671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 22950475 - 22950233
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  22950475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 22950376  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  22950375 ttggtctctccctaccaatcctttatcccaatccctgaatacctttattttcctctgcatcttatttataatactaagtcctatagctgttacatagaag 22950276  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  22950275 tttagtagacagcaattactacacacaagtaacagttacttat 22950233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 19934768 - 19934526
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  19934768 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcaagagtcttggttctctcccctccaagtattcgagagc 19934669  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  19934668 ttggtctctccctaccaatcctttatcccaatccctaaatgcctttcttttcctctgcatcttatttataatactaagtcttatagttgttacatagaag 19934569  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| || |||||||||||| ||||||||| |||||||||    
T  19934568 tttagtagacggcaattactacacacaagtaacagttacttat 19934526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 44 - 271
Target Start/End: Original strand, 29526039 - 29526267
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  29526039 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaatccgagagtcttggttctctcccctccaagaattcgagagc 29526138  T
Q  144 ttggtctctccctacctatccttt-atcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaa 242  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  29526139 ttggtctctccctaccaatcctttaatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaa 29526238  T
Q  243 gtttagtaaacagcaattactacatacaa 271  Q
    |||||||| ||||||||||||||| ||||    
T  29526239 gtttagtagacagcaattactacacacaa 29526267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 44 - 271
Target Start/End: Original strand, 29527252 - 29527480
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccc-tccaagaattcgagag 142  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||    
T  29527252 gataggaacagatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctccccctccaagaattcaagag 29527351  T
Q  143 cttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaa 242  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||    
T  29527352 cttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttaaaatactaagtccaatagctgttacatagaa 29527451  T
Q  243 gtttagtaaacagcaattactacatacaa 271  Q
    |||||||| ||||||||||||||| ||||    
T  29527452 gtttagtagacagcaattactacacacaa 29527480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 44 - 283
Target Start/End: Original strand, 39701589 - 39701832
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  39701589 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 39701688  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttacata 239  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     ||||||||  ||||||||    
T  39701689 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaactctctcctatagcagttacata 39701788  T
Q  240 gaagtttagtaaacagcaattactacatacaagtaacggttact 283  Q
    ||||||||||| |||||||||||| || | ||||||| ||||||    
T  39701789 gaagtttagtagacagcaattactgcacataagtaacagttact 39701832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 44 - 283
Target Start/End: Original strand, 39702819 - 39703062
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  39702819 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 39702918  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttacata 239  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||     ||||||||  ||||||||    
T  39702919 ttggtctctccctaccgatcctttatcccaatccctgaatgcctttcttttcctttgcaacttatttataatacaaactctctcctatagcagttacata 39703018  T
Q  240 gaagtttagtaaacagcaattactacatacaagtaacggttact 283  Q
    ||||||||||| ||||||| |||| || | ||||||| ||||||    
T  39703019 gaagtttagtagacagcaaatactgcacataagtaacagttact 39703062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 44 - 263
Target Start/End: Original strand, 41050926 - 41051152
Alignment:
Q  44 gataggaaccgatatcaaaat-ataaactaatagtaag-attacaatataatcccaagaaattct-agagccttggttctctcccctccaagaattcgag 140  Q
    ||||| ||| ||||||||||| ||||| | |||||||  || |||||| |||||||||||||||  |||| ||||||||| |||||||||||||||| ||    
T  41050926 gatagaaactgatatcaaaattataaatttatagtaattatcacaatagaatcccaagaaattccgagagtcttggttctgtcccctccaagaattcaag 41051025  T
Q  141 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttac 236  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||     |||||||   |||||    
T  41051026 agcttggtctctccctacctatcctttatcccaatccctgaatatctgtcttttcctctgcatcttatttataatactaactctctcctatatcagttac 41051125  T
Q  237 atagaagtttagtaaacagcaattact 263  Q
    |||||||||||||| | ||||| ||||    
T  41051126 atagaagtttagtagatagcaactact 41051152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 19139483 - 19139374
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  19139483 gatagaaactgatatcaaaatttaaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattagagagc 19139384  T
Q  144 ttggtctctc 153  Q
    ||||| ||||    
T  19139383 ttggtttctc 19139374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 35144500 - 35144613
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaata-taatcccaagaaattctagagccttggttctctcccctccaagaattcgagag 142  Q
    ||||| ||| |||||||||||  ||| ||||| ||| | ||||||| |  ||| ||||||||| |||| ||||||||||||||||||||||||||||||     
T  35144500 gatagaaactgatatcaaaattcaaattaatattaataatacaatagttttcctaagaaattcgagagtcttggttctctcccctccaagaattcgagac 35144599  T
Q  143 cttggtctctccct 156  Q
    ||||||||||||||    
T  35144600 cttggtctctccct 35144613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 33215264 - 33215321
Alignment:
Q  190 cttttcctctgcatc-ttatttataatactaattc-ctatagttgttacatagaagtt 245  Q
    ||||||||||||||| |||||||||||||||| || ||||||  ||||||||||||||    
T  33215264 cttttcctctgcatctttatttataatactaactcactatagcagttacatagaagtt 33215321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 37473660 - 37473631
Alignment:
Q  127 tccaagaattcgagagcttggtctctccct 156  Q
    ||||||||||||||||||||||||||||||    
T  37473660 tccaagaattcgagagcttggtctctccct 37473631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 54994821 - 54994579
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  54994821 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 54994722  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  54994721 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagcagttacatagaag 54994622  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| | ||||||| |||||||||    
T  54994621 tttagtagacagcaattactacacataagtaacagttacttat 54994579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 44 - 276
Target Start/End: Complemental strand, 7197928 - 7197692
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  7197928 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 7197829  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttacata 239  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     |||| |||  ||||||||    
T  7197828 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaactctctcctgtagcagttacata 7197729  T
Q  240 gaagtttagtaaacagcaattactacatacaagtaac 276  Q
    ||||||| ||| |||||||||||| || | |||||||    
T  7197728 gaagttttgtagacagcaattactgcacataagtaac 7197692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 45826153 - 45826331
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  45826153 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagaattcgagagc 45826252  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaatt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45826253 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaatt 45826331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 44 - 286
Target Start/End: Original strand, 2386293 - 2386543
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagat--------tacaatataatcccaagaaattctagagccttggttctctcccctccaagaat 135  Q
    ||||| ||| |||||||||||||||||||||||||| ||        ||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  2386293 gatagaaactgatatcaaaatataaactaatagtaatatactaatattacaatataatcccaagaaattcgagagtctcggttctctcccctccaagaat 2386392  T
Q  136 tcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgtta 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||   ||||    
T  2386393 tcgagagcttggtctctccctacctatcctttatctcaatccctgaatgcctttcttttcctctgcatcttatttataatactaagtcctataacagtta 2386492  T
Q  236 catagaagtttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    |||| |||||||||| |||||||||||| || ||||| ||| |||||||||    
T  2386493 cataaaagtttagtagacagcaattactgcagacaagcaacagttacttat 2386543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 592711 - 592537
Alignment:
Q  46 taggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagctt 145  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  592711 taggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagggtcttggttctctcccctccaagaattcgagagctt 592612  T
Q  146 ggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 220  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  592611 gggctctccctaccaatcctttatcccaatccctgaatacctttcttttcctttgcatcttatttataatactaa 592537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 48637539 - 48637715
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||    
T  48637539 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaatttgagagtcttggttctctcccctccaagtattcgagagc 48637638  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 220  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  48637639 ttggtctctccctaccaatcctttatcccaatccctcaatacctctcttttcctctgcatcttatttataatactaa 48637715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 263
Target Start/End: Complemental strand, 40977001 - 40976771
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  40977001 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaaaaaattcgagagtcttggttctctcccctccaagaattcgagagc 40976902  T
Q  144 ttggtctc-------tccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaat----tcctatagttg 232  Q
    ||||||||       ||| ||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||    ||||||||  |    
T  40976901 ttggtctctccatagtccataccagtcctttatcccaatccctgcatgcctttcttttcctctgcatcttatttataagactaattccctcctatagcag 40976802  T
Q  233 ttacatagaagtttagtaaacagcaattact 263  Q
    |||||| |||||||||||  |||||| ||||    
T  40976801 ttacattgaagtttagtagccagcaactact 40976771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 51274571 - 51274436
Alignment:
Q  71 taatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatcctttatc 170  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  51274571 taatagtaatattacaatataatcccaagaaattcgagagtcttggttctcccccctccaagaatttgagagcttggtctctccctacctatcctttatc 51274472  T
Q  171 ccaatccctgaatacctttcttttcctctgcatctt 206  Q
    ||||||||||||| || |||||||||||||||||||    
T  51274471 ccaatccctgaatgcccttcttttcctctgcatctt 51274436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39983852 - 39983893
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39983852 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 39983893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39984913 - 39984954
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39984913 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 39984954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41968296 - 41968336
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatc 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41968296 cttcccagtcaaatcctcagatgcccctcaatcttcccatc 41968336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 25184729 - 25184672
Alignment:
Q  190 cttttcctctgcatc-ttatttataatactaa-ttcctatagttgttacatagaagtt 245  Q
    ||||||||||||||| |||||||||||||||| | |||||||  ||||||||||||||    
T  25184729 cttttcctctgcatctttatttataatactaactccctatagcagttacatagaagtt 25184672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 16772790 - 16772848
Alignment:
Q  96 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 156  Q
    |||||||||| |||| |||||| ||||| | |||||||||||||||||||||||| |||||    
T  16772790 caagaaattcgagagtcttggt-ctctctc-tccaagaattcgagagcttggtctttccct 16772848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 49987228 - 49987286
Alignment:
Q  95 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 155  Q
    ||||||||||| |||| |||||| ||||||| |||||||||| ||||| ||||||||||||    
T  49987228 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 49987286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 54886899 - 54886927
Alignment:
Q  126 ctccaagaattcgagagcttggtctctcc 154  Q
    |||||||||||||||||||||||||||||    
T  54886899 ctccaagaattcgagagcttggtctctcc 54886927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 44 - 286
Target Start/End: Original strand, 8089720 - 8089962
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  8089720 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 8089819  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  8089820 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 8089919  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  8089920 tttagtagacagcaattactacacacaagtaacagttacttat 8089962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 10582912 - 10582670
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  10582912 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 10582813  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  10582812 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 10582713  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  10582712 tttagtagacagcaattactacacacaagtaacagttacttat 10582670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 10584118 - 10583876
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  10584118 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 10584019  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||    
T  10584018 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcccatagctgttacatagaag 10583919  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  10583918 tttagtagacagcaattactacacacaagtaacagttacttat 10583876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 44 - 261
Target Start/End: Complemental strand, 49122340 - 49122123
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  49122340 gataggaactgatatgaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 49122241  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  49122240 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaag 49122141  T
Q  244 tttagtaaacagcaatta 261  Q
    ||||| | ||| ||||||    
T  49122140 tttagcagacaacaatta 49122123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 49123474 - 49123232
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||    
T  49123474 gataggaactgatatcaaaatataaactaatagtaagattagaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagtgc 49123375  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
        |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  49123374 ccaatctctccctaccaatcctttaccccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 49123275  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  49123274 tttagtagacagcaattactacacacaagtaacagttacttat 49123232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 71 - 286
Target Start/End: Complemental strand, 49122124 - 49121909
Alignment:
Q  71 taatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatcctttatc 170  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  49122124 taatagtaagattacaatataatcccaagaaatttgagagtcttggttctctcccctccaagtattcgagagcttgatctctccctaccaatcctttatc 49122025  T
Q  171 ccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaagtttagtaaacagcaattactacataca 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||| || |||    
T  49122024 ccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaagtttagtagacaacaattacttcacaca 49121925  T
Q  271 agtaacggttacttat 286  Q
    |||||| |||||||||    
T  49121924 agtaacagttacttat 49121909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 8788534 - 8788710
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||    
T  8788534 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagaattcgaaagc 8788633  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8788634 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 8788710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 245
Target Start/End: Original strand, 23540999 - 23541176
Alignment:
Q  72 aatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaatt--cgagagcttggtctctccctacctatcctttat 169  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||||| ||| || |||||| |||  | ||||||||||||||||||||| |||| ||||    
T  23540999 aatagtaagattacagtataatcccaagaaattcaagagtcttggttttcttccttccaagtattttcaagagcttggtctctccctaccaatccattat 23541098  T
Q  170 cccaatccctgaatacctttcttttcctctgcatc-ttatttataatactaa-ttcctatagttgttacatagaagtt 245  Q
    ||||||||||||||  | |||||||||| |||||| ||||| |||||||||| | |||||||  ||||||||||||||    
T  23541099 cccaatccctgaatgtccttcttttcctttgcatctttattcataatactaactccctatagcagttacatagaagtt 23541176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 23540880 - 23540998
Alignment:
Q  45 ataggaaccgatatcaaaatat--aaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaa--ttcgag 140  Q
    |||||||| |||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||| || |||||| |  ||| ||    
T  23540880 ataggaactgatatcaaaatatataaactaatagtaagattacagtataatcccaagaaattcaagagtcttggttttcttccttccaagtattttcaag 23540979  T
Q  141 agcttggtctctccctacc 159  Q
    |||||||||||||||||||    
T  23540980 agcttggtctctccctacc 23540998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 3815335 - 3815222
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataat-cccaagaaattctagagccttggttctctcccctccaagaattcgagag 142  Q
    ||||| ||| |||||||||||| ||| ||||| ||| | ||||||| | | |||| ||||||| |||| ||||||||||||||||||||||||||||| |    
T  3815335 gatagaaactgatatcaaaatacaaattaatattaataatacaatagatttcccatgaaattcgagagtcttggttctctcccctccaagaattcgagtg 3815236  T
Q  143 cttggtctctccct 156  Q
    ||||||||||||||    
T  3815235 cttggtctctccct 3815222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 19950378 - 19950442
Alignment:
Q  84 acaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggt 148  Q
    |||||| | ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  19950378 acaataaattcccaagaaatttgagagccttggttctctcccctccaagaattcgagagcttggt 19950442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 36346591 - 36346653
Alignment:
Q  94 cccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 156  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  36346591 cccaagaaattcgagagtcttggttctctcccctccatgaattcgagagcttgatctctccct 36346653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8090150 - 8090191
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8090150 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 8090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27962726 - 27962767
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27962726 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 27962767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 172969 - 173009
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatc 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  172969 cttcccagtcaaatcctcagatgcccctcaatcttcccatc 173009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48907410 - 48907451
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  48907410 cttcccagtcaaatccttagatgcccctcaatcttcccatcc 48907451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 17826222 - 17826271
Alignment:
Q  106 tagagccttggttctctcccctccaagaattcgagagcttggtctctccc 155  Q
    ||||| ||||| ||||  ||||||||||||||||||||||||||||||||    
T  17826222 tagagtcttgggtctcctccctccaagaattcgagagcttggtctctccc 17826271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 30038108 - 30038170
Alignment:
Q  93 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 155  Q
    ||||||||||||| |||| | | | |||||||| ||||||||||| |||| ||||||||||||    
T  30038108 tcccaagaaattcaagagtcgtcggtctctcccttccaagaattcaagagtttggtctctccc 30038170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 40670604 - 40670646
Alignment:
Q  114 tggttctctcccctccaagaattcgagagcttggtctctccct 156  Q
    |||||||||||| |||||||||| |||||||||| ||||||||    
T  40670604 tggttctctcccgtccaagaatttgagagcttggcctctccct 40670646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 6081413 - 6081171
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  6081413 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 6081314  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  6081313 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 6081214  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  6081213 tttagtagacagcaattactacacacaagtaacagttacttat 6081171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 6082620 - 6082378
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  6082620 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 6082521  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| |||||||||||||    
T  6082520 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataataataagtcctatagctgttacatagaag 6082421  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  6082420 tttagtagacagcaattactacacacaagtaacagttacttat 6082378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 17901273 - 17901159
Alignment:
Q  44 gataggaaccgatatcaaaa--tataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgaga 141  Q
    ||||| ||| ||||||||||  |||||| ||||||||| ||||||||| | ||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  17901273 gatagaaactgatatcaaaacatataaattaatagtaatattacaatagattcccaagaaattcgagagtcttggtactctcccctccaagaattcgaga 17901174  T
Q  142 gcttggtctctccct 156  Q
    |||||||||||||||    
T  17901173 gcttggtctctccct 17901159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 27021464 - 27021363
Alignment:
Q  54 gatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctc 153  Q
    ||||||||||||| |  ||||||||| ||||||||| |||||||||||||||  ||| | |||||| |||| || |||||||||||||||||| ||||||    
T  27021464 gatatcaaaatattacttaatagtaatattacaatagaatcccaagaaattc--gagtcctggttccctcctcttcaagaattcgagagcttgatctctc 27021367  T
Q  154 ccta 157  Q
    ||||    
T  27021366 ccta 27021363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13077571 - 13077530
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13077571 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13077530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13078632 - 13078591
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13078632 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13078591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 30640782 - 30640722
Alignment:
Q  95 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 156  Q
    ||||||||||  ||||||||||| |||| || ||||||||||| ||||||||||||||||||    
T  30640782 ccaagaaatttgagagccttggt-ctctgccttccaagaattcaagagcttggtctctccct 30640722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 44 - 286
Target Start/End: Original strand, 205590 - 205832
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  205590 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 205689  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  205690 ttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 205789  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  205790 tttagtagacagcaattactacacacaagtaacagttacttat 205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 211667 - 211843
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  211667 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 211766  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  211767 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaa 211843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 11962242 - 11962000
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||    
T  11962242 gataggaactgatatcaaaatataaactaatagttagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtgttcgagagc 11962143  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    ||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||     
T  11962142 ttggtctatccctaccaatcctttaccccaatgcctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaaa 11962043  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  11962042 tttagtagacagcaattactacacacaagtaacagttacttat 11962000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 3567178 - 3567008
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||| ||| || |||||||||||| |||||||||| ||||||||| |||| |||||||||| |  | |||||||||||||||||||||||||||| ||     
T  3567178 gatagaaactgagatcaaaatataacctaatagtaatattacaatacaatctcaagaaattcaattgtcttggttctctcccctccaagaattcgatagt 3567079  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaat-acctttcttttcctctgcatc-ttatttataa 214  Q
    |||||||||||||||||||||||||| |||||||  ||||  || ||||||||||||||||| ||||||||||    
T  3567078 ttggtctctccctacctatcctttattccaatcc--gaatgccccttcttttcctctgcatctttatttataa 3567008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 45638746 - 45638831
Alignment:
Q  128 ccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttata 213  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45638746 ccaagaattcgagagcttggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 45638831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 54938938 - 54938978
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatc 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  54938938 cttcccagtcaaatcctcagatgcccctcaatcttcccatc 54938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 27869434 - 27869371
Alignment:
Q  96 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacc 159  Q
    |||||||||| |||| ||||  |||||||| ||||||||||| |||||||||||||||||||||    
T  27869434 caagaaattcgagagtcttgcatctctcccttccaagaattcaagagcttggtctctccctacc 27869371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 45638710 - 45638752
Alignment:
Q  59 caaaatataaactaatagtaagattacaatataatcccaagaa 101  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  45638710 caaagtataaactaatagtaatattacaatataatcccaagaa 45638752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 32992448 - 32992387
Alignment:
Q  93 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 155  Q
    ||||||| ||||| |||| ||||| |||||||| |||||||| |||||||||| |||||||||    
T  32992448 tcccaaggaattcgagagtcttgggtctctccc-tccaagaactcgagagctttgtctctccc 32992387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 36982313 - 36982362
Alignment:
Q  93 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||| |||||||||| ||||| |||||||| |||||||||||||||||    
T  36982313 tcccaaggaattctagagtcttggatctctccc-tccaagaattcgagagc 36982362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 25542486 - 25542543
Alignment:
Q  190 cttttcctctgcatc-ttatttataatactaattc-ctatagttgttacatagaagtt 245  Q
    ||||||||||||||| |||||||||||||||| || ||||||  ||||||||||||||    
T  25542486 cttttcctctgcatctttatttataatactaactcactatagcagttacatagaagtt 25542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 33790094 - 33789849
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattctagagccttggttctctcccctccaagaattcgag 140  Q
    ||||| ||| |||||||||||||||| | |||||||  |||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||| |||    
T  33790094 gatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaagaaattcgagagtcttggttctctcccctccaagaatttgag 33789995  T
Q  141 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  33789994 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatag 33789895  T
Q  241 aagtttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||    
T  33789894 aagtttagtagacagcaattactacacacaagtaacagttacttat 33789849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 12325068 - 12324855
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattctagagccttggttctctcccctccaagaattcgag 140  Q
    ||||| ||| |||||||||||||||| | |||||||  |||||||||||  |||||||| ||||| |||| |||||||||||||||||||| ||||||||    
T  12325068 gatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaaggaattcgagagtcttggttctctcccctccaaaaattcgag 12324969  T
Q  141 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttac 236  Q
    || |||||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||     ||||||||| |||||    
T  12324968 agtttggtctctccctaccaatcctttatcgcaatccctgaatagctttcttttcctttgcatcttatttataatactaactctctcctatagtagttac 12324869  T
Q  237 atagaagtttagta 250  Q
    | | ||||||||||    
T  12324868 acataagtttagta 12324855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 18955505 - 18955376
Alignment:
Q  118 tctctcccctccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatc-ttatttataata 216  Q
    |||||||| |||||||||| ||||| |||||||||||||||| ||||||||||| |||  | |||| |  ||||||||||||||||| |||||||||| |    
T  18955505 tctctcccttccaagaattagagagattggtctctccctaccaatcctttatccaaataaccgaattctcttcttttcctctgcatctttatttataaca 18955406  T
Q  217 ctaa-ttcctatagttgttacatagaagtt 245  Q
    |||| | |||||||  |||||||| |||||    
T  18955405 ctaactccctatagcagttacataaaagtt 18955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4517352 - 4517393
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4517352 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 4517393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14684597 - 14684556
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14684597 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 14684556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14685658 - 14685617
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14685658 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 14685617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21306453 - 21306412
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21306453 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 21306412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21307510 - 21307469
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21307510 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 21307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30246499 - 30246458
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30246499 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 30246458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40421421 - 40421380
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40421421 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 40421380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40422480 - 40422439
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40422480 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 40422439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 13218743 - 13218802
Alignment:
Q  95 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 155  Q
    ||||||||||| ||||  |||| |||||||| | |||||||||||||||||||||||||||    
T  13218743 ccaagaaattcaagagt-ttgggtctctcccttgcaagaattcgagagcttggtctctccc 13218802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 3302494 - 3302449
Alignment:
Q  127 tccaagaattcgagagc-ttggtctctccctacctatcctttatcc 171  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||    
T  3302494 tccaagaattcaagagccttggtctctccctaccaatcctttatcc 3302449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 42599698 - 42599753
Alignment:
Q  95 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctc 151  Q
    ||||||||||| |||| ||||||| |||||| |||||||||| || |||||||||||    
T  42599698 ccaagaaattcaagagtcttggtt-tctcccttccaagaatttgaaagcttggtctc 42599753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 12436 - 12195
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||| |||||    
T  12436 gataggaacttatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagagttcaagagc 12337  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 243  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||    
T  12336 ttggtctctccctacctatcctttatcccaatccctgaataactttcttttcctctgcatcttatttataataccaagtcctatagctgttacatagaag 12237  T
Q  244 tttagtaaacagcaattactacatacaagtaacggttacttat 286  Q
     |||||| ||| ||||||||||| ||||||||| |||||||||    
T  12236 -ttagtagacaacaattactacacacaagtaacagttacttat 12195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 44 - 263
Target Start/End: Complemental strand, 11288 - 11065
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||  |||||||||    
T  11288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccttccaagttttcgagagc 11189  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttacata 239  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||     ||||||||  ||||||||    
T  11188 ttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttatttataatactaactctctcctatagcagttacata 11089  T
Q  240 gaagtttagtaaacagcaattact 263  Q
    ||||||||||| ||||||||||||    
T  11088 gaagtttagtagacagcaattact 11065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 69 - 286
Target Start/End: Original strand, 177889 - 178106
Alignment:
Q  69 actaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatccttta 168  Q
    |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  177889 actaatggtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccctaccaatccttta 177988  T
Q  169 tcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaagtttagtaaacagcaattactacata 268  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||| |    
T  177989 ccccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaaatttagtagacagcaattactacaca 178088  T
Q  269 caagtaacggttacttat 286  Q
    |||||||| |||||||||    
T  178089 caagtaacagttacttat 178106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 80929 - 80753
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  80929 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaataaattcgagagtcttggttctctcccctccaagaattcgagagc 80830  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  80829 ttggtctctccctacctatcctttatcccaatccctgaatacctttctttttctctgcatcttatttataatactaa 80753  T

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Target: scaffold0026; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 49 - 220
Target Start/End: Complemental strand, 79728 - 79557
Alignment:
Q  49 gaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggt 148  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  79728 gaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagcttggt 79629  T
Q  149 ctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 220  Q
    |||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  79628 ctctccgtacctatcctttatcctaatccatgaatacctttattttcctctgcatcttatttataatactaa 79557  T

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Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 40254615 - 40254410
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  40254615 gatagaaacagatatcaaaatataaattaatagtaatattacaatagaatcccaagaaattcgagagtcttggttctctcccctccaagaatt-gagagc 40254517  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa-ttcctatagttgttacatagaa 242  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || | |||||||  |||||||||||    
T  40254516 ttggtctctccctaccaatcctttatcccaatccctgaat-cctttcttttcctctgcatcttatttataatatgaactccctatagcagttacatagaa 40254418  T
Q  243 gtttagta 250  Q
    ||||||||    
T  40254417 gtttagta 40254410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 21661290 - 21661182
Alignment:
Q  47 aggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttg 146  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  21661290 aggaactgatatcaaaatataaactaatagtaagattacaatatattcccaagaaattcgagagtcttggttctctcccctccaataattcgagagcttg 21661191  T
Q  147 gtctctccc 155  Q
    |||||||||    
T  21661190 gtctctccc 21661182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 2411062 - 2411264
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 143  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||  ||||||||||||||  |||| |||| |||||||||||||| ||||||  ||||    
T  2411062 gatagaaactgatatcaaaatataaactaatagtaatattacaatcgaatcccaagaaatttgagagtcttgattctctcccctccaggaattc--gagc 2411159  T
Q  144 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatc-ttatttataatactaa-ttcctatagttgttacataga 241  Q
    |||||||||||||||| ||||||||||| |||  | |||| ||  | |||||||||||| | || ||||||||||||| | |||||||  |||||||| |    
T  2411160 ttggtctctccctaccaatcctttatccaaataaccgaatgcccctattttcctctgcaactttgtttataatactaactccctatagaagttacataaa 2411259  T
Q  242 agttt 246  Q
    |||||    
T  2411260 agttt 2411264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 26246969 - 26247043
Alignment:
Q  44 gataggaaccgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggtt 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  26246969 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggtt 26247043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13255606 - 13255565
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13255606 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13255565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45036272 - 45036313
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45036272 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 45036313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 5176597 - 5176658
Alignment:
Q  93 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 155  Q
    ||||||| ||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  5176597 tcccaaggaattcgagagtcttgggtctctccc-tccaagaattcgagagcttggtctctccc 5176658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 26187599 - 26187541
Alignment:
Q  93 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctc 151  Q
    ||||||||||||  |||||||||| |||||||| |||||||||| ||||||||||||||    
T  26187599 tcccaagaaatttgagagccttgggtctctcccttccaagaatttgagagcttggtctc 26187541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6540687 - 6540728
Alignment:
Q  1 cttcccagtcaaatcctcagatgcccctcaatcttcccatcc 42  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  6540687 cttcccagtcaagtcctcagatgcccctcaatcttcccatcc 6540728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 13261037 - 13260936
Alignment:
Q  71 taatagtaagattacaatataatcccaagaaattctagagccttggttctctccc-ctccaagaattcgagagcttggtctctccctacctatcctttat 169  Q
    |||||||||  |||||||| | ||||||||||||| |||| ||||| ||||||||  | |||||||  ||||||||  |||||||| ||| |||||||||    
T  13261037 taatagtaatgttacaataaattcccaagaaattcgagagtcttggatctctcccttttcaagaatcagagagcttattctctcccgaccaatcctttat 13260938  T
Q  170 cc 171  Q
    ||    
T  13260937 cc 13260936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 36241268 - 36241325
Alignment:
Q  190 cttttcctctgcatc-ttatttataatactaattc-ctatagttgttacatagaagtt 245  Q
    ||||||||||||||| |||||||||||||||| || ||||||  ||||||||||||||    
T  36241268 cttttcctctgcatctttatttataatactaactcactatagcagttacatagaagtt 36241325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 19729244 - 19729212
Alignment:
Q  122 tcccctccaagaattcgagagcttggtctctcc 154  Q
    |||| ||||||||||||||||||||||||||||    
T  19729244 tcccttccaagaattcgagagcttggtctctcc 19729212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 43506411 - 43506470
Alignment:
Q  96 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 156  Q
    |||||||||| |||| |||||| ||||||| |  ||||||| |||||||||||||||||||    
T  43506411 caagaaattcgagagtcttggt-ctctccctttgaagaattagagagcttggtctctccct 43506470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 155
Target Start/End: Complemental strand, 33934 - 33903
Alignment:
Q  124 ccctccaagaattcgagagcttggtctctccc 155  Q
    ||||||||||||||||||||||||||||||||    
T  33934 ccctccaagaattcgagagcttggtctctccc 33903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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