View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_32 (Length: 306)

Name: NF1504_1D_low_32
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_32
NF1504_1D_low_32
[»] chr8 (3 HSPs)
chr8 (5-291)||(1409217-1409503)
chr8 (185-291)||(5981452-5981560)
chr8 (185-284)||(5981744-5981844)
[»] chr4 (4 HSPs)
chr4 (209-288)||(4469193-4469272)
chr4 (153-283)||(11307268-11307400)
chr4 (209-249)||(16559370-16559410)
chr4 (47-91)||(30551590-30551634)
[»] chr2 (2 HSPs)
chr2 (210-288)||(19548187-19548267)
chr2 (191-288)||(10066574-10066673)
[»] chr1 (2 HSPs)
chr1 (210-288)||(43834538-43834618)
chr1 (210-248)||(5822175-5822213)
[»] chr7 (1 HSPs)
chr7 (212-255)||(22562032-22562075)
[»] chr5 (1 HSPs)
chr5 (39-87)||(13097462-13097510)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 1409503 - 1409217
Alignment:
Q  5 caaatataaccaattatttaatttgctcaaaaacctaacttgtaactactttaaacaatgttaaaataattctaacaaatctcaaaccaactctaaccga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1409503 caaatataaccaattatttaatttgctcaaaaacctaacttgtaactactttaaacaatgttaaaataattctaacaaatctcaaaccatctctaaccga 1409404  T
Q  105 gtgaagtgataaataggttgatggttcaattttcaatggaaatgaaagtgttggggagttcagggaacgctgggagaggtaatgggctaaatatccagga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||    
T  1409403 gtgaagtgataaataggttgatggttcaattttcaatggaaatgaaagtgttggggagttcagggaacgtcgggagaggtaatgggttaaatatccagga 1409304  T
Q  205 tcactaagagacttagacatcacattttcatccaaaatcttaagacattagctatgggtcccctcccttatatatccaacattttct 291  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  1409303 tcactaagaaacttagacaccacattttcatccaaaatcttaagaaattagctatggatcccctcccttatatatccaacattttct 1409217  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 5981452 - 5981560
Alignment:
Q  185 aatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattagct--atgggtcccctcccttatatatcca 282  Q
    |||||||||||  ||||| | || ||||||||||||||| ||||||| || |||||| |||||| ||| || |  |||||||||||| ||||||||||||    
T  5981452 aatgggctaaacgtccagaaccaataagagacttagacaccacatttccacccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatcca 5981551  T
Q  283 acattttct 291  Q
    || ||||||    
T  5981552 acgttttct 5981560  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 5981744 - 5981844
Alignment:
Q  185 aatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattag-ctatgggtcccctcccttatatatccaa 283  Q
    |||||||||||  || |||| || ||||||||||||||| ||||| | || |||||| |||||| || | |  ||||||||||||| |||||||||||||    
T  5981744 aatgggctaaacttcaaggaccagtaagagacttagacaccacatctccacccaaaaccttaaggcaatggtttatgggtcccctctcttatatatccaa 5981843  T
Q  284 c 284  Q
    |    
T  5981844 c 5981844  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 4469272 - 4469193
Alignment:
Q  209 taagagacttagacatcacattttcatccaaaatcttaagacattagctatgggtcccctcccttatatatccaacattt 288  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||   || |||||||| ||||||||| ||||||||    
T  4469272 taagagactcagacatcacattttcacccaaaaccttaagacattagacgtgtgtcccctctcttatatatacaacattt 4469193  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 11307268 - 11307400
Alignment:
Q  153 tgttggggagttcagggaacgctgggagaggtaatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacat 252  Q
    |||||||||||  ||||| | ||||||| |  |||  ||||||| | ||||| |||||||||||||||||| ||||| | || ||||||  ||||| |||    
T  11307268 tgttggggagtctagggagcactgggagcgacaataagctaaatgttcaggaccactaagagacttagacaccacatctccacccaaaacattaaggcat 11307367  T
Q  253 tagctat--gggtcccctcccttatatatccaa 283  Q
     || |||  | |||||||| |||||||||||||    
T  11307368 caggtatacgtgtcccctctcttatatatccaa 11307400  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 16559410 - 16559370
Alignment:
Q  209 taagagacttagacatcacattttcatccaaaatcttaaga 249  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  16559410 taagagacttagacaccacatctccatccaaaatcttaaga 16559370  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 30551590 - 30551634
Alignment:
Q  47 taactactttaaacaatgttaaaataattctaacaaatctcaaac 91  Q
    ||||||| ||||||||| || |||||||| |||||||||||||||    
T  30551590 taactaccttaaacaatattcaaataattttaacaaatctcaaac 30551634  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 19548267 - 19548187
Alignment:
Q  210 aagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacattt 288  Q
    |||||||||| ||| ||||| | || |||||| ||||||||||||| |||  ||||| |||| ||||||||||||||||||    
T  19548267 aagagacttatacaccacatctccacccaaaaccttaagacattagatatatgggtctcctctcttatatatccaacattt 19548187  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 288
Target Start/End: Complemental strand, 10066673 - 10066574
Alignment:
Q  191 ctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattag--ctatgggtcccctcccttatatatccaacattt 288  Q
    |||||| ||||||| |||||||||| ||| | | ||||| | || ||||||||||||| ||||||   ||||| || |||  ||||||||||||||||||    
T  10066673 ctaaatgtccaggaccactaagagatttatataccacatctccacccaaaatcttaaggcattaggtatatggatctcctatcttatatatccaacattt 10066574  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 43834618 - 43834538
Alignment:
Q  210 aagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacattt 288  Q
    |||||||||||||  ||||| | |||| |||| ||||||||||||| |||  |||||||||| ||||||||| ||||||||    
T  43834618 aagagacttagacgccacatctccatcaaaaaccttaagacattaggtatatgggtcccctctcttatatattcaacattt 43834538  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 5822213 - 5822175
Alignment:
Q  210 aagagacttagacatcacattttcatccaaaatcttaag 248  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  5822213 aagagacttaaacatcacattttcatctaaaatcttaag 5822175  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 22562075 - 22562032
Alignment:
Q  212 gagacttagacatcacattttcatccaaaatcttaagacattag 255  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  22562075 gagacttagacatcatatcttcatccaaaatcttaaggcattag 22562032  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 13097462 - 13097510
Alignment:
Q  39 ctaacttgtaactactttaaacaatgttaaaataattctaacaaatctc 87  Q
    ||||||| ||||||||||||||||||||||| ||| | || ||||||||    
T  13097462 ctaacttttaactactttaaacaatgttaaactaagtataccaaatctc 13097510  T

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