View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_34 (Length: 304)
Name: NF1504_1D_low_34
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 30 - 294
Target Start/End: Original strand, 34086045 - 34086306
Alignment:
| Q |
30 |
ggtgttgtcagtggtaaatagtaggtttgtttcaatcttttagggattttgtggattcatcgcagatatcgtcgaagggagggtataattttacttgcaa |
129 |
Q |
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| T |
34086045 |
ggtgttgtcagtggtaaatagtaggtttgtttcaatcttttagggattttgtggattcatcgcagttatcgtcgaagggagggtataattttacttgcaa |
34086144 |
T |
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| Q |
130 |
tctctattttactcctttggtttgaggactagataagaaggatgtgtttgtgattcgagtggagcaggtttcaatttgtcattggaaaaatccttaaatt |
229 |
Q |
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| T |
34086145 |
tctctattttacccctttggtttgaggactagat---aaggatgtgtttgtgattcgagtggagcaggtttcaatttgtcattggaaaaatccttaaatt |
34086241 |
T |
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| Q |
230 |
gtttgttgtctgagaaaattgatgcataatggccctggccttggcaacaggaccgtttgttcata |
294 |
Q |
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| T |
34086242 |
gtttgttgtctgagaaaattgatgcataatggccctggccttggcaacaggaccgtttgttcata |
34086306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 39076944 - 39077114
Alignment:
| Q |
46 |
aatagtaggtttgtttcaatcttttagggattttgtggattcatcgcagatatcgtcgaagggagggtataattttacttgcaatctctattttactcct |
145 |
Q |
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| T |
39076944 |
aatagtaggtttgtttcaaacttttaaagatttggtggattcatcgcagaaattttctagggtagtgtgtaattttactcaatatctctattctacccct |
39077043 |
T |
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| Q |
146 |
ttggtttgaggactagataagaaggatgtgtttgtgattcgagtggagcaggtttcaatttgtcattggaaaaa |
219 |
Q |
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| T |
39077044 |
ctgttttgaggactatat---aaggatgtgtttgtgatttgagcggagcaggtttccatctgtgattgaaaaaa |
39077114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 13818875 - 13818820
Alignment:
| Q |
239 |
ctgagaaaattgatgcataatggccctggccttggcaacaggaccgtttgttcata |
294 |
Q |
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| T |
13818875 |
ctgagaaaattgatgcataatggcactggccttggcaacaagaccgtttattcata |
13818820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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