View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_37 (Length: 294)
Name: NF1504_1D_low_37
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 25345690 - 25345412
Alignment:
| Q |
12 |
gaagacttactgcccttatgcgaattgttctgttttgttgggcaaagaaaatgatattggaagagaatttaacagcagttctaggtgcccttcgtgtcac |
111 |
Q |
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| T |
25345690 |
gaagacttactgcccttatgcgaattgttctgttttgttgggcaaagaaaatgatattggaagagaatttaacagcagttctaggtgcccttcgtgtcac |
25345591 |
T |
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| Q |
112 |
agacaattttgtgcaaagtgcaaagttccatggcatgcaggaatgaattgtcagaaattccaacaatttaaaaggaatgacaaaaatgatttggataaga |
211 |
Q |
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| T |
25345590 |
agacaattttgtgcaaagtgcaaagttccatggcatgcaggaatgaattgtcagaaattccaacaatttaaaaggaatgacaaaaatgatttggataaga |
25345491 |
T |
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| Q |
212 |
aatttttggcgttggctaaagaacaacagtggaaaagatgtccaaattgctttatgtatgtcaagaaaagtgcaggatg |
290 |
Q |
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| T |
25345490 |
aatttttggtgttggctaaagaacaacagtggaaaagatgtccaaattgctttatgtatgtcaagaaaagtgcaggatg |
25345412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 25334537 - 25334397
Alignment:
| Q |
90 |
ttctaggtgcccttcgtgtcacagacaattttgtgcaaagtgcaaagttccatggcatgcaggaatgaattgtcagaaattccaacaatttaaaaggaat |
189 |
Q |
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| T |
25334537 |
ttctaagtgtccttcgtgtcacagacgcttttgcgcgaagtgcaaagttccgtggcatggaggaatgagttgtgagagattccaagcaatcaaaaggagt |
25334438 |
T |
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| Q |
190 |
gacaaaaatgatttggataagaaatttttggcgttggctaa |
230 |
Q |
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| T |
25334437 |
aaccctaatgatttggataccatatttttggagttggctaa |
25334397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 21794734 - 21794663
Alignment:
| Q |
202 |
ttggataagaaatttttggcgttggctaaagaacaacagtggaaaagatgtccaaattgctttatgtatgtc |
273 |
Q |
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| T |
21794734 |
ttggataagaaatttttggagttggcaaaaagagaaaggtggaaaagatgtccaagttgctctatctatgtc |
21794663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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