View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_38 (Length: 293)
Name: NF1504_1D_low_38
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 8272592 - 8272423
Alignment:
| Q |
1 |
gtcattctagaaagatttttgacaatccttacatagtataagaagtactcgacacactcatattctagaacaataattgtatggtcattgttttcgtgtt |
100 |
Q |
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| T |
8272592 |
gtcattctagaaagatttttgacaatccttacgtagtataagaagtactcgacacactcatattctagaacaataattgtatcgtcattgttttcatgtt |
8272493 |
T |
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| Q |
101 |
taagagcacatcaaaggtgcgacaaatgcaaagctacaacttgtgcttctacaatatcacgatgattttg |
170 |
Q |
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| T |
8272492 |
taagagcacatcaaaggtgcgacaaatgcaaagctacaacttgtgcttctacaatatcacggtgattttg |
8272423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 8272005 - 8271955
Alignment:
| Q |
218 |
caacaatgataaatttgcagtggctttactagggcacaatcaattttcaac |
268 |
Q |
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| T |
8272005 |
caacaatgataaatttgcagtggctttgctagagcacaatcaattttcaac |
8271955 |
T |
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