View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_39 (Length: 290)

Name: NF1504_1D_low_39
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_39
NF1504_1D_low_39
[»] chr2 (24 HSPs)
chr2 (16-268)||(39129418-39129667)
chr2 (16-196)||(39422377-39422557)
chr2 (37-188)||(39474186-39474337)
chr2 (16-201)||(39458208-39458393)
chr2 (37-201)||(39136280-39136444)
chr2 (16-268)||(39495431-39495683)
chr2 (16-201)||(39488078-39488263)
chr2 (37-201)||(39151897-39152061)
chr2 (37-201)||(39416278-39416445)
chr2 (16-186)||(39123536-39123706)
chr2 (45-196)||(39601995-39602146)
chr2 (126-201)||(27154981-27155056)
chr2 (45-192)||(39214933-39215080)
chr2 (85-195)||(39199439-39199549)
chr2 (115-196)||(39450503-39450584)
chr2 (132-196)||(39382217-39382281)
chr2 (16-196)||(39427579-39427750)
chr2 (158-196)||(39399043-39399081)
chr2 (152-194)||(39479182-39479224)
chr2 (115-188)||(39391653-39391726)
chr2 (111-170)||(2360942-2361001)
chr2 (130-201)||(44623618-44623689)
chr2 (139-201)||(44896356-44896418)
chr2 (132-184)||(44614489-44614541)
[»] chr7 (1 HSPs)
chr7 (37-201)||(19806641-19806805)
[»] chr6 (1 HSPs)
chr6 (158-199)||(16112425-16112466)
[»] chr5 (2 HSPs)
chr5 (136-188)||(33559635-33559687)
chr5 (132-196)||(17058845-17058909)
[»] chr4 (1 HSPs)
chr4 (139-184)||(33151002-33151047)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 39129667 - 39129418
Alignment:
Q  16 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129667 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 39129568  T
Q  116 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttgnnnnnnnnnnnngc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||             ||    
T  39129567 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttgtt---ttttctttttgc 39129471  T
Q  216 aatcgttaaatgatttttctaccaatgcaaattctttcctcggcgaagaaagt 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129470 aatcgttaaatgatttttctaccaatgcaaattctttcctcggcgaagaaagt 39129418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 39422377 - 39422557
Alignment:
Q  16 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 115  Q
    ||||||| | || |||| || ||||||| | || |||| |||||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||||    
T  39422377 catcaaagagagctgtgattcctttgctacgaattcctcgacacattcttcaattttcccctgcattttcttgtatgcttccttaattcttccaacatca 39422476  T
Q  116 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 196  Q
    ||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||    
T  39422477 ctaatttcctttttcttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttct 39422557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 39474186 - 39474337
Alignment:
Q  37 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattt 136  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||| |||||||| ||||||| |||||    
T  39474186 ctttgctacaaaatccttgacacattcttcaatttttccctgcattttcttgtgagcttcgttcattcttccaacatgactaattttctttttcttattt 39474285  T
Q  137 tcaagctctttggagcactcctcaatatctctctttatggactgcaatctct 188  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  39474286 tcaagctcttcggagcactcctcaatatctctctttatggaatgcaatctct 39474337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 39458393 - 39458208
Alignment:
Q  16 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 115  Q
    ||||||| | |||||||||| ||||||||||||||||| |||||||| |||||||||  ||| |||||||||| ||||||| | |||||||||| ||| |    
T  39458393 catcaaatagagttgtgcttcctttgctgcaaaatcctcgacacatttttcaattttggcctcgattttcttgcgagcttcgtcaattcttccaacataa 39458294  T
Q  116 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 201  Q
     || ||||||||||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39458293 atagtttcctttttcttgttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctacttg 39458208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 39136444 - 39136280
Alignment:
Q  37 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattt 136  Q
    ||||||| ||||||||||||||||||| |||||||| ||||| ||||||||| |||||||  ||||||||||| |||| ||||||||||||||| |||||    
T  39136444 ctttgctacaaaatccttgacacattcgtcaatttttccctgcattttcttgcgagcttcgataattcttccaacatccctaatttcctttttcttattt 39136345  T
Q  137 tcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 201  Q
    ||||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  39136344 tcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctacttg 39136280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 39495431 - 39495683
Alignment:
Q  16 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 115  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||  |||| |||||||| || | ||| ||| || || || ||  |    
T  39495431 catcaaacagagctgtgcttgctttgctgcaaaatccttgacgcattcttcaattttttcctgcattttcttatgggattcgttagttatttcaacaaaa 39495530  T
Q  116 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttgnnnnnnnnnnnngc 215  Q
    || ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||            ||    
T  39495531 ctcatttccttttttatatttccaagctctttggagcgctcctcaatatctctctttatggactgcaatctctcctcttcttcgtgtcttttctttttgc 39495630  T
Q  216 aatcgttaaatgatttttctaccaatgcaaattctttcctcggcgaagaaagt 268  Q
    | |||| ||||||||||||||||||||||| ||||||| |  |||||||||||    
T  39495631 actcgtgaaatgatttttctaccaatgcaagttctttctttagcgaagaaagt 39495683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 39488078 - 39488263
Alignment:
Q  16 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 115  Q
    ||||||| | || ||| ||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||| ||  |    
T  39488078 catcaaatatagctgtccttcctttgctacaaaatctttgacacattcttcaattttcccctgcattttctagtgaacttcgttaattcttccaacacaa 39488177  T
Q  116 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 201  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||  ||||||| ||||    
T  39488178 ctaatttcctttttcttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctacttg 39488263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 39152061 - 39151897
Alignment:
Q  37 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattt 136  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||||||||  |||||| |||||||||||| ||    |||||||||||||| |||||    
T  39152061 ctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttattt 39151962  T
Q  137 tcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 201  Q
    ||||||||||||||||  |||||||||| ||||||||| ||||||| ||||||||||||| ||||    
T  39151961 tcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctacttg 39151897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 39416278 - 39416445
Alignment:
Q  37 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttcct---taattcttccagcatcactaatttcctttttcata 133  Q
    ||||||| ||||||||||||||||||||||| ||||  |||| ||||||||||||||||| |   ||||||||||| ||| |||||||||||||| | ||    
T  39416278 ctttgctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgctta 39416377  T
Q  134 ttttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 201  Q
    |||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  39416378 ttttcaagttctctgcagcactcctcaatatctctctttatggaatgcaatctcttcttttctacttg 39416445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 39123706 - 39123536
Alignment:
Q  16 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 115  Q
    ||||||| | ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||| ||||||||||||| ||| | ||||||| || ||| |    
T  39123706 catcaaagagagttgtgcttgctttacaagaaaatccttgacaaattcttcagtttttccctgcattttcttgtgagattcgtaaattctttcaacataa 39123607  T
Q  116 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatct 186  Q
    || ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||||||    
T  39123606 ctcatttcctttttcatattttcaagatctttggagcacccctcaatatctctctgtatggagtgcaatct 39123536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 39602146 - 39601995
Alignment:
Q  45 caaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattttcaagctc 144  Q
    |||||||||| | ||||||||||||||| ||||| |||||||  ||||||||   ||||| || |  |  |||||||||||||||| |||||||||||||    
T  39602146 caaaatccttaatacattcttcaatttttccctgcattttctcatgagcttcgaaaattcctctaaaacaactaatttcctttttcttattttcaagctc 39602047  T
Q  145 tttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 196  Q
    ||||  |||||||| ||||||| ||||||||||||||||||| |||||||||    
T  39602046 tttgcggcactcctgaatatctatctttatggactgcaatctattctcttct 39601995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 27154981 - 27155056
Alignment:
Q  126 ttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 201  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  27154981 ttttcatatttccaagctctttggagcactcctcaatatctctctttatggactgcaatctttcctcttcttcttg 27155056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 39215080 - 39214933
Alignment:
Q  45 caaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattttcaagctc 144  Q
    |||||||||| | ||||||||||||||| ||||| |||||||  ||||| || | |||||||| | ||  ||| |  |   | ||| |||||||||||||    
T  39215080 caaaatccttaatacattcttcaatttttccctgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttattttcaagctc 39214981  T
Q  145 tttggagcactcctcaatatctctctttatggactgcaatctcttctc 192  Q
    |||  |||||||||||| || |||||||||||||||||||||||||||    
T  39214980 tttacagcactcctcaacatatctctttatggactgcaatctcttctc 39214933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 39199439 - 39199549
Alignment:
Q  85 cttgtgagcttccttaattcttccagcatcactaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaat 184  Q
    |||| ||||||| | |||||||| | || |||||| ||  || ||| |||||| |||||||||| ||||||| ||| |||||||||||||||||||||||    
T  39199439 cttgcgagcttcatcaattcttctaacaacactaacttggttcttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgcaat 39199538  T
Q  185 ctcttctcttc 195  Q
    || ||||||||    
T  39199539 cttttctcttc 39199549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 39450584 - 39450503
Alignment:
Q  115 actaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 196  Q
    ||||| || ||||||| |||||| |||||||||| |||| |||||||||||| |||| ||||||||||||||||| ||||||    
T  39450584 actaacttgctttttcttattttgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctcttttcttct 39450503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 39382217 - 39382281
Alignment:
Q  132 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 196  Q
    |||||| |||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  39382217 tattttgaagctctttgcagcactcttcagtatctctctttatggactgtaatctcttctcttct 39382281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 39427579 - 39427750
Alignment:
Q  16 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 115  Q
    ||||||||| || ||||||| ||||||  ||||||||||||||||||| |||| ||  ||||| | ||||||||||| ||| ||| | ||         |    
T  39427579 catcaaacagagctgtgctttctttgcatcaaaatccttgacacattcatcaaattctccctgcaatttcttgtgagattcattagtgct---------a 39427669  T
Q  116 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 196  Q
    |||| |||||||||||| ||| | |||||| ||||||||||||| || ||||||||||||||   |||||||| |||||||    
T  39427670 ctaacttcctttttcatctttccgagctctatggagcactcctcgatctctctctttatggaaatcaatctctcctcttct 39427750  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 39399043 - 39399081
Alignment:
Q  158 tcaatatctctctttatggactgcaatctcttctcttct 196  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39399043 tcaatatctctctttatggactgcaatctcttctcttct 39399081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 39479182 - 39479224
Alignment:
Q  152 cactcctcaatatctctctttatggactgcaatctcttctctt 194  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  39479182 cactcttcaatatctctctttatggactgcaatctcttctctt 39479224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 39391653 - 39391726
Alignment:
Q  115 actaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctct 188  Q
    ||||| || ||| ||| ||| ||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||    
T  39391653 actaacttgcttgttcttatcttcaagctctttgcagcactcttcaatatctttctttatggacagcaatctct 39391726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 2361001 - 2360942
Alignment:
Q  111 catcactaatttcctttttcatattttcaagctctttggagcactcctcaatatctctct 170  Q
    ||||||||  || ||||||| |||||  ||||||||||||||||||||||||||||||||    
T  2361001 catcactagcttgctttttcttatttagaagctctttggagcactcctcaatatctctct 2360942  T

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Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 44623689 - 44623618
Alignment:
Q  130 catattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 201  Q
    ||||||||| ||||||| | |||||| |||||||||||||||||| ||| |||||| | |||||||| ||||    
T  44623689 catattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttctacttg 44623618  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 44896356 - 44896418
Alignment:
Q  139 aagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 201  Q
    ||||||||||  ||||||||| ||||||||||| |||||||||| | ||| ||||||| ||||    
T  44896356 aagctctttgtcgcactcctcgatatctctcttgatggactgcagtatctcctcttctacttg 44896418  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 44614541 - 44614489
Alignment:
Q  132 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaat 184  Q
    ||||||| ||||||||| |||| | |||||||||||||||||| ||| |||||    
T  44614541 tattttctagctctttgcagcatttctcaatatctctctttatagaccgcaat 44614489  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 19806805 - 19806641
Alignment:
Q  37 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattt 136  Q
    ||||||| ||||||||||||||||||  | | ||| |||||| ||||||||| ||||||  |||||||| ||| ||| |||||||||||||||| |||||    
T  19806805 ctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttcttattt 19806706  T
Q  137 tcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 201  Q
    ||||| |||| | |||| ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  19806705 tcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttg 19806641  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 16112466 - 16112425
Alignment:
Q  158 tcaatatctctctttatggactgcaatctcttctcttcttct 199  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  16112466 tcaatatctctctttatggactgcaatttcttctcttcttct 16112425  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 33559687 - 33559635
Alignment:
Q  136 ttcaagctctttggagcactcctcaatatctctctttatggactgcaatctct 188  Q
    ||||||||||||| ||||||| ||||||||| ||||||  |||||||||||||    
T  33559687 ttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctct 33559635  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 17058909 - 17058845
Alignment:
Q  132 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 196  Q
    |||||| |||||| | | ||||||  ||||||||||||||||| |||||||||| ||| ||||||    
T  17058909 tatttttaagctcatagtagcacttatcaatatctctctttatagactgcaatcgcttttcttct 17058845  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 33151047 - 33151002
Alignment:
Q  139 aagctctttggagcactcctcaatatctctctttatggactgcaat 184  Q
    ||||||||||||||||| |||||||||||||| || ||| ||||||    
T  33151047 aagctctttggagcactgctcaatatctctctctagggagtgcaat 33151002  T

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