View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_4 (Length: 489)

Name: NF1504_1D_low_4
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_4
NF1504_1D_low_4
[»] chr8 (17 HSPs)
chr8 (173-481)||(27049128-27049448)
chr8 (52-131)||(27049450-27049529)
chr8 (153-231)||(10120780-10120858)
chr8 (160-278)||(10114465-10114584)
chr8 (156-245)||(9956785-9956875)
chr8 (185-256)||(27028829-27028901)
chr8 (153-221)||(32840954-32841022)
chr8 (184-254)||(1930035-1930106)
chr8 (153-283)||(7514549-7514680)
chr8 (157-283)||(11376674-11376800)
chr8 (153-283)||(26771236-26771367)
chr8 (189-283)||(33714240-33714334)
chr8 (155-222)||(33808336-33808403)
chr8 (190-232)||(4281569-4281611)
chr8 (181-222)||(27492970-27493011)
chr8 (201-269)||(28769355-28769424)
chr8 (191-278)||(24558829-24558917)
[»] chr3 (18 HSPs)
chr3 (153-283)||(21367638-21367769)
chr3 (152-220)||(26878235-26878303)
chr3 (152-283)||(34610773-34610905)
chr3 (184-254)||(35394497-35394568)
chr3 (153-279)||(45264334-45264461)
chr3 (153-285)||(402510-402643)
chr3 (184-283)||(20170707-20170807)
chr3 (188-258)||(2719464-2719535)
chr3 (190-283)||(36783339-36783433)
chr3 (230-280)||(37689430-37689480)
chr3 (163-272)||(45541553-45541662)
chr3 (198-283)||(37788831-37788916)
chr3 (199-258)||(50600192-50600252)
chr3 (157-278)||(20880452-20880574)
chr3 (204-257)||(34254827-34254881)
chr3 (201-253)||(37273135-37273188)
chr3 (187-283)||(25447247-25447343)
chr3 (183-258)||(32582740-32582816)
[»] chr5 (29 HSPs)
chr5 (179-258)||(7984965-7985045)
chr5 (157-283)||(39105435-39105562)
chr5 (201-283)||(12425542-12425625)
chr5 (179-283)||(9202742-9202847)
chr5 (191-284)||(6587113-6587207)
chr5 (155-267)||(28776980-28777093)
chr5 (190-245)||(4014429-4014485)
chr5 (153-244)||(42100321-42100413)
chr5 (153-220)||(7808540-7808607)
chr5 (157-283)||(17258856-17258982)
chr5 (153-267)||(36639509-36639623)
chr5 (200-282)||(1619062-1619144)
chr5 (204-281)||(7319379-7319457)
chr5 (156-241)||(29925854-29925940)
chr5 (179-272)||(34160713-34160807)
chr5 (188-254)||(7319011-7319078)
chr5 (201-283)||(7674619-7674702)
chr5 (155-245)||(37611186-37611276)
chr5 (155-245)||(37787916-37788006)
chr5 (160-245)||(17368685-17368770)
chr5 (155-232)||(10639976-10640053)
chr5 (190-258)||(25461321-25461390)
chr5 (211-278)||(2563186-2563254)
chr5 (179-227)||(6096575-6096623)
chr5 (201-272)||(10272447-10272519)
chr5 (204-267)||(18637039-18637103)
chr5 (232-272)||(32408640-32408680)
chr5 (184-283)||(35446026-35446126)
chr5 (184-279)||(40119867-40119963)
[»] chr6 (12 HSPs)
chr6 (153-283)||(2735040-2735171)
chr6 (157-283)||(9093528-9093655)
chr6 (163-258)||(31624086-31624181)
chr6 (156-282)||(13907557-13907684)
chr6 (153-231)||(9912159-9912237)
chr6 (157-241)||(31813174-31813259)
chr6 (190-283)||(769110-769203)
chr6 (179-245)||(34430455-34430522)
chr6 (199-284)||(8364990-8365076)
chr6 (201-245)||(835265-835310)
chr6 (153-252)||(2454991-2455090)
chr6 (186-258)||(9109252-9109325)
[»] chr2 (31 HSPs)
chr2 (157-283)||(1625871-1625998)
chr2 (165-283)||(18066099-18066218)
chr2 (153-279)||(26626848-26626975)
chr2 (155-245)||(40682365-40682455)
chr2 (212-279)||(8017409-8017477)
chr2 (107-271)||(2142636-2142802)
chr2 (163-244)||(750680-750762)
chr2 (200-272)||(680485-680558)
chr2 (203-283)||(12464491-12464572)
chr2 (153-283)||(26143608-26143740)
chr2 (186-245)||(40279416-40279476)
chr2 (156-254)||(16451118-16451217)
chr2 (190-283)||(18962042-18962137)
chr2 (189-283)||(28039336-28039431)
chr2 (187-245)||(40279276-40279335)
chr2 (187-245)||(40279346-40279405)
chr2 (185-231)||(7928299-7928345)
chr2 (190-283)||(12313178-12313272)
chr2 (184-245)||(16398123-16398185)
chr2 (201-243)||(43868289-43868331)
chr2 (156-245)||(45229520-45229610)
chr2 (193-245)||(10646297-10646350)
chr2 (201-245)||(15977994-15978039)
chr2 (203-255)||(33319830-33319883)
chr2 (189-245)||(35379020-35379077)
chr2 (185-277)||(36043881-36043974)
chr2 (187-283)||(40279168-40279265)
chr2 (184-283)||(3611197-3611297)
chr2 (184-255)||(9174814-9174886)
chr2 (184-228)||(21788341-21788385)
chr2 (189-229)||(43511111-43511151)
[»] chr7 (17 HSPs)
chr7 (153-283)||(20526417-20526548)
chr7 (162-283)||(39967891-39968013)
chr7 (184-254)||(36517579-36517650)
chr7 (210-272)||(39393603-39393665)
chr7 (108-280)||(33678754-33678927)
chr7 (192-283)||(40688993-40689085)
chr7 (153-283)||(39907774-39907903)
chr7 (201-283)||(44821930-44822013)
chr7 (153-266)||(20526897-20527011)
chr7 (201-255)||(25596032-25596087)
chr7 (163-245)||(34035926-34036009)
chr7 (153-279)||(17248530-17248654)
chr7 (153-245)||(44989645-44989739)
chr7 (210-279)||(47177611-47177681)
chr7 (211-283)||(12110331-12110404)
chr7 (199-283)||(22283758-22283843)
chr7 (203-267)||(43648227-43648292)
[»] chr4 (17 HSPs)
chr4 (156-283)||(1706593-1706721)
chr4 (153-283)||(22661980-22662112)
chr4 (153-283)||(22666459-22666591)
chr4 (201-283)||(28300315-28300398)
chr4 (201-283)||(51630082-51630165)
chr4 (179-256)||(55414414-55414492)
chr4 (187-283)||(3155574-3155671)
chr4 (162-245)||(17822842-17822926)
chr4 (157-256)||(24169261-24169361)
chr4 (185-280)||(40174537-40174633)
chr4 (155-222)||(48719362-48719428)
chr4 (200-245)||(825505-825551)
chr4 (190-267)||(35571636-35571714)
chr4 (201-258)||(43932431-43932489)
chr4 (236-284)||(24091433-24091481)
chr4 (163-215)||(49939929-49939981)
chr4 (202-285)||(54392836-54392920)
[»] chr1 (25 HSPs)
chr1 (153-284)||(4576775-4576906)
chr1 (186-269)||(45975675-45975759)
chr1 (157-283)||(10199381-10199507)
chr1 (156-269)||(7136970-7137083)
chr1 (192-283)||(9656621-9656713)
chr1 (153-221)||(11941296-11941364)
chr1 (184-283)||(24915050-24915150)
chr1 (186-245)||(51695496-51695556)
chr1 (185-283)||(27820337-27820436)
chr1 (154-283)||(3887601-3887731)
chr1 (153-245)||(7941615-7941708)
chr1 (152-283)||(39976177-39976312)
chr1 (192-283)||(34290207-34290299)
chr1 (194-268)||(35179125-35179200)
chr1 (184-231)||(38503464-38503511)
chr1 (155-222)||(47498809-47498876)
chr1 (190-255)||(10744300-10744366)
chr1 (190-283)||(31517745-31517839)
chr1 (218-272)||(31918235-31918289)
chr1 (210-283)||(49888738-49888812)
chr1 (199-283)||(7218088-7218173)
chr1 (190-258)||(14629971-14630040)
chr1 (199-255)||(32113657-32113714)
chr1 (188-245)||(38882915-38882972)
chr1 (231-283)||(48830123-48830175)
[»] scaffold0018 (1 HSPs)
scaffold0018 (202-283)||(178342-178424)
[»] scaffold0098 (1 HSPs)
scaffold0098 (210-247)||(50852-50889)
[»] scaffold0024 (1 HSPs)
scaffold0024 (211-254)||(21311-21355)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 173 - 481
Target Start/End: Complemental strand, 27049448 - 27049128
Alignment:
Q  173 aaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataatt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27049448 aaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttatacgaaaataatt 27049349  T
Q  273 gaactttatttat------------aaataaattatacgcaagtgcttgtactataagctttaagttagatgtttatccaaacagagtctaaatcttttt 360  Q
    |||||||||||||            |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27049348 gaactttatttatcttttgctatagaaataaattatacgtaagtgcttgtactataagctttaaattagatgtttatccaaacagagtctaaatcttttt 27049249  T
Q  361 tgtactaaaaagttgatagtgtatgtaatgtgttcaatttgcatatagattttgtatggatgttcctaaaatactcttatatgtatagattagaagtgtt 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27049248 tgtactaaaaagttgatagtgtatgtaatgtgttcaatttgcatatagattttgtatggatgttcctaaaatactcttatatgtatagattagacgtgtt 27049149  T
Q  461 caactctgaccttttcatctc 481  Q
    |||||||||| ||||||||||    
T  27049148 caactctgactttttcatctc 27049128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 27049529 - 27049450
Alignment:
Q  52 atgtgtggatgtcggacacgacatgtgattaatttttcaatttaggaaggcgtgattggattgacttatttaaatttatc 131  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  27049529 atgtgtggatgtcggacatgacatgtgattaatttttcaatctaggaaggcgtgattggattgacttatttaaacttatc 27049450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 10120858 - 10120780
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa 231  Q
    |||||||||||||||||||||||   |||| |||||||  |||||||||||||||| ||||||||||||| ||||||||    
T  10120858 actgtttgagagaacttatgaaaacagcttatgacatttatcatatgctgttttcagcttattttcataagttctccaa 10120780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 10114584 - 10114465
Alignment:
Q  160 gagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 258  Q
    ||||||||||||||||    ||| | |||||  |||||||||||||||| ||||||||||||  |||||||| |||||| ||||||| || |||||||||    
T  10114584 gagagaacttatgaaaacaacttataacatttatcatatgctgttttcagcttattttcatatgttctccaatatagctaatgaaaacagcttatagctt 10114485  T
Q  259 gtacgaaaataattgaactt 278  Q
     ||| |||| |||| |||||    
T  10114484 ataccaaaacaattcaactt 10114465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 9956785 - 9956875
Alignment:
Q  156 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||||||||||||||||||| | | || || ||||||||||| |  ||||||| ||||||||||||| |||||||| |||| |||||||||    
T  9956785 gtttgagagaacttatgaaaatagtttatggcattgttcataagtagttttcagcttattttcataagttctccaagatagattatgaaaa 9956875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 27028901 - 27028829
Alignment:
Q  185 gacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagc 256  Q
    |||||| |||||| ||| |||||| |||||||||||||  ||||||| |||||||||||||| || |||||||    
T  27028901 gacatttttcataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagc 27028829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 32840954 - 32841022
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcata 221  Q
    |||||||| ||||||||||||||    ||| |||||||||||||| | |||||||| ||||||||||||    
T  32840954 actgtttgggagaacttatgaaaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 1930106 - 1930035
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 254  Q
    |||||||||||||| |||||||||| |||||||||| ||  || |||| |||||||||||||| || |||||    
T  1930106 tgacattgttcataagctgttttcagcttattttcacaaggtcaccaagatagcttatgaaaacagcttata 1930035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 7514680 - 7514549
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagttt 251  Q
    |||||||| |||||||| |||||   |||  | |||||||||||| ||||||| || || |||||||  | |||| |||| ||||||||||||| || ||    
T  7514680 actgtttgggagaacttgtgaaagcagctgataacattgttcataagctgtttccaactaattttcactagttctgcaaaatagcttatgaaaacagctt 7514581  T
Q  252 atagcttgtacgaaaataattgaactttattt 283  Q
     |||||| || ||||| |||||||| ||||||    
T  7514580 gtagcttatatgaaaacaattgaacattattt 7514549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 11376800 - 11376674
Alignment:
Q  157 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctc-caaatagcttatgaaaaaagtttatag 255  Q
    |||| |||||||||||||| | |||||||||| |||| ||||  |||||||| ||||||||||||  |||||  |||||||||| ||||  |  ||||||    
T  11376800 tttgggagaacttatgaaaatagcttgtgaca-tgttaatatcttgttttcagcttattttcatagattctctaaaatagcttaagaaagcatcttatag 11376702  T
Q  256 cttgtacgaaaataattgaactttattt 283  Q
    ||| ||  |||||||||  |||||||||    
T  11376701 cttatatcaaaataattagactttattt 11376674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 26771367 - 26771236
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    |||||||| ||||||||||||||   |||| ||||| | |||| | ||  |||||| ||||||||||||| ||||| || ||| ||||| ||||||| ||    
T  26771367 actgtttgggagaacttatgaaaacagcttatgacaattttcaaaagcctttttcaacttattttcataagttctctaatatatcttataaaaaaagctt 26771268  T
Q  252 atagcttgtacgaaaataattgaactttattt 283  Q
    ||||| | ||| |||| |||| || |||||||    
T  26771267 atagcatatacaaaaacaatttaagtttattt 26771236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 33714240 - 33714334
Alignment:
Q  189 ttgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    ||||||||| |||||||||| |||||||| ||||  ||||| | |||||||||||||| || |||||| |||||| |||||| ||  |||||||||    
T  33714240 ttgttcataagctgttttcagcttatttttataagctctcccagatagcttatgaaaatagcttatagattgtac-aaaatagtttgactttattt 33714334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 33808403 - 33808336
Alignment:
Q  155 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataa 222  Q
    |||||| |||||||||||||| | |||| ||| |||||||||| | |||||| | |||||||||||||    
T  33808403 tgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataa 33808336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 4281611 - 4281569
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaaa 232  Q
    |||||||| | |||||||||||||||||||||| |||||||||    
T  4281611 tgttcataagttgttttcatcttattttcataaattctccaaa 4281569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 27493011 - 27492970
Alignment:
Q  181 ttgtgacattgttcatatgctgttttcatcttattttcataa 222  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  27493011 ttgtgacattgttcataagctattttcaacttattttcataa 27492970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 28769355 - 28769424
Alignment:
Q  201 tgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagtttatagcttgtacgaaaata 269  Q
    |||||||| ||||||| |||||  |||||||| ||||||||||||| || ||||||||| || |||||||    
T  28769355 tgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaata 28769424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 24558917 - 24558829
Alignment:
Q  191 gttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactt 278  Q
    ||||||| ||| | |||| ||||||| ||| |  ||||||| |||||||||||||| |  ||||||||| ||||||||||||| |||||    
T  24558917 gttcataagctatgttcaacttatttacattaagtctccaagatagcttatgaaaacaacttatagcttatacgaaaataatttaactt 24558829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 21367769 - 21367638
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    |||||||| ||||||||||||||   |||| |||||||||||| | |||||||||| ||||||||||||| |||||||| |||||||||||||| |  ||    
T  21367769 actgtttgggagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaactt 21367670  T
Q  252 atagcttgtacgaaaataattgaactttattt 283  Q
    |||  || |||||||| |||| ||||||||||    
T  21367669 atacattatacgaaaacaatttaactttattt 21367638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 26878303 - 26878235
Alignment:
Q  152 aactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcat 220  Q
    |||||||||||||||||| ||||| | |||| ||||||||||||||  ||||||||| |||||||||||    
T  26878303 aactgtttgagagaacttgtgaaaatagcttatgacattgttcataaactgttttcagcttattttcat 26878235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 283
Target Start/End: Original strand, 34610773 - 34610905
Alignment:
Q  152 aactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtt 250  Q
    |||| |||| ||||||||||||||   |||| |||||||||||||| |  ||||||| || |||||||||| ||| |||| |||||||||||||  |  |    
T  34610773 aactatttgggagaacttatgaaaactgcttatgacattgttcataagtggttttcagctgattttcataagttcgccaagatagcttatgaaagcaact 34610872  T
Q  251 tatagcttgtacgaaaataattgaactttattt 283  Q
    |||| ||||||| ||||||||| ||||| ||||    
T  34610873 tataacttgtacaaaaataatttaacttcattt 34610905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 35394497 - 35394568
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 254  Q
    |||||||||||||| |||||||||| ||||||||||||| |||| ||| |||||||||||||| ||| ||||    
T  35394497 tgacattgttcataagctgttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 35394568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 279
Target Start/End: Original strand, 45264334 - 45264461
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    |||| ||||||||||||||||||    |||  | ||||||||||| |||||||||| ||||||||||  | || ||||| | |||||||||||| || ||    
T  45264334 actggttgagagaacttatgaaaacaacttacggcattgttcataagctgttttcaccttattttcaccaattttccaagagagcttatgaaaatagctt 45264433  T
Q  252 atagcttgtacgaaaataattgaacttt 279  Q
    |||||||||| ||||| |||| ||||||    
T  45264434 atagcttgtaagaaaacaatttaacttt 45264461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 285
Target Start/End: Original strand, 402510 - 402643
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    |||||||| |||||| |||||||   |||| |||||||||||||| |||||||||| |||| ||||| || |||| ||| |||| |||| |||| || ||    
T  402510 actgtttgggagaacgtatgaaaacagcttatgacattgttcataagctgttttcagcttaatttcacaagttcttcaagatagattataaaaacagctt 402609  T
Q  252 atagcttgtacgaaaataattgaactttatttat 285  Q
    ||| ||| |||||||| |||| || |||| ||||    
T  402610 ataacttatacgaaaacaatttaaatttaattat 402643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 283
Target Start/End: Original strand, 20170707 - 20170807
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 282  Q
    |||||||||| | | | |||||| | ||||||| |||||  ||| ||| |||||||| ||||| |||||||||||| |||||||| ||||||||||||||    
T  20170707 tgacattgtttaaaagttgtttttagcttatttgcataagctctacaagatagcttaggaaaacagtttatagcttttacgaaaacaattgaactttatt 20170806  T
Q  283 t 283  Q
    |    
T  20170807 t 20170807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 2719535 - 2719464
Alignment:
Q  188 attgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 258  Q
    ||||| |||| | |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  2719535 attgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttatagctt 2719464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 36783339 - 36783433
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| |||||||||| ||||| ||||||||| |||||| |||||||||||||| || | |||| || || ||||| ||||  |||||||||    
T  36783339 tgttcataagctgttttcagcttatattcataattgctccaatatagcttatgaaaacagctaatagtttatatgaaaacaattttactttattt 36783433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 37689430 - 37689480
Alignment:
Q  230 aaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttta 280  Q
    |||||||||||||||| |||||||||||| || |||||||||| |||||||    
T  37689430 aaatagcttatgaaaatagtttatagcttatatgaaaataatttaacttta 37689480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 45541662 - 45541553
Alignment:
Q  163 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgta 261  Q
    |||||||||||||   |||| |||||| ||||||| ||||||||||  ||||| |||||| || ||||| |||||||||||||| |   |||||||| ||    
T  45541662 agaacttatgaaaacagcttatgacat-gttcataagctgttttcaggttattctcataagttatccaagatagcttatgaaaataaactatagcttata 45541564  T
Q  262 cgaaaataatt 272  Q
    |||||||||||    
T  45541563 cgaaaataatt 45541553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 37788916 - 37788831
Alignment:
Q  198 tgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    ||||||||| | || || |||||||  ||| ||||||||||||||||| |  |||||| || |||||||||||||| |||||||||    
T  37788916 tgctgttttaagctgatgttcataaactcttcaaatagcttatgaaaacaacttatagattatacgaaaataattggactttattt 37788831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 50600192 - 50600252
Alignment:
Q  199 gctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 258  Q
    |||||||||| ||||||||||||| |||||||| |||||| ||||||| || |||||||||    
T  50600192 gctgttttcagcttattttcataagttctccaatatagctgatgaaaacagcttatagctt 50600252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 278
Target Start/End: Complemental strand, 20880574 - 20880452
Alignment:
Q  157 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    |||| |||||| |||||||   |||| ||||| | |||||| ||| |||| | ||||||||||||| |||||||| ||||||| | |||| |||||||||    
T  20880574 tttgggagaacctatgaaaacagcttatgacaattttcataagcttttttgagcttattttcataagttctccaatatagcttttaaaaacagtttatag 20880475  T
Q  256 cttgtacgaaaataattgaactt 278  Q
    | | ||| |||| |||| |||||    
T  20880474 catatacaaaaacaatttaactt 20880452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 34254827 - 34254881
Alignment:
Q  204 tttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagct 257  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||||| |||||||||||    
T  34254827 tttcagcttatttacataagttctccagaatagcttatgaaaatagtttatagct 34254881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 37273188 - 37273135
Alignment:
Q  201 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttat 253  Q
    |||||||| ||||||| ||||| |||||||| |||||||||||||| |||||||    
T  37273188 tgttttcaacttatttccataagttctccaagatagcttatgaaaacagtttat 37273135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 25447247 - 25447343
Alignment:
Q  187 cattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    ||||||||| | |||||||||| ||| || ||||||    || | |||||||||||||| |||||||||||| ||| |||| |||| || |||||||    
T  25447247 cattgttcacaagctgttttcagctttttctcataagaaatcaagatagcttatgaaaacagtttatagcttatacaaaaacaatttaagtttattt 25447343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 32582816 - 32582740
Alignment:
Q  183 gtgacattgttcatatgctgttttcatcttattttcataatttctcc-aaatagcttatgaaaaaagtttatagctt 258  Q
    ||||||||||||| | | | |||||| ||||||| ||||| |||||| |||||||||||||||| || || ||||||    
T  32582816 gtgacattgttcaaaagattttttcaacttatttccataagttctccaaaatagcttatgaaaacagcttgtagctt 32582740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 7985045 - 7984965
Alignment:
Q  179 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 258  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  7985045 gcttgtgacgttgttcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttatagctt 7984965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 39105562 - 39105435
Alignment:
Q  157 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    |||| ||||| ||||||||   |||| |||||||||||||| ||| |||| | ||||||||||||| |||||||| |||||||||||||| || ||||||    
T  39105562 tttgggagaatttatgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagcttatgaaaacagattatag 39105463  T
Q  256 cttgtacgaaaataattgaactttattt 283  Q
    ||| |||||||| |||| ||||| ||||    
T  39105462 cttatacgaaaacaatttaacttcattt 39105435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 12425625 - 12425542
Alignment:
Q  201 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| ||||||||||||| |||||||| ||||||| |||||| || ||||||||| |||||||| |||| ||||||||||    
T  12425625 tgttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttattt 12425542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 9202742 - 9202847
Alignment:
Q  179 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaact 277  Q
    |||| |||||||||||||| ||||||| || ||||||||||||| |||| ||| ||| |||||||||| || |||| |||| || ||||| |||| ||||    
T  9202742 gcttatgacattgttcataagctgtttccagcttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatgaaaacaatttaact 9202841  T
Q  278 ttattt 283  Q
    ||||||    
T  9202842 ttattt 9202847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 191 - 284
Target Start/End: Original strand, 6587113 - 6587207
Alignment:
Q  191 gttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattta 284  Q
    ||||||| ||||||| || |||||||||| || |||||||  |||||||||||||| |  ||||||||| |||||||| ||||||| ||||||||    
T  6587113 gttcataagctgtttacagcttattttcacaagttctccactatagcttatgaaaacaacttatagcttatacgaaaacaattgaagtttattta 6587207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 28777093 - 28776980
Alignment:
Q  155 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttat 253  Q
    |||||| |||||||||| ||| | | || |||||||||||| |  || |||| ||||||||||||| | |||||||| |||||||||||||| || ||||    
T  28777093 tgtttgtgagaacttataaaaatagtttatgacattgttcaaaaactatttttatcttattttcattagttctccaagatagcttatgaaaacagcttat 28776994  T
Q  254 agcttgtacgaaaa 267  Q
    ||| | ||||||||    
T  28776993 agcctatacgaaaa 28776980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 4014429 - 4014485
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagcttatgaaaa 4014485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 42100413 - 42100321
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctc-caaatagcttatgaaa 244  Q
    ||||| ||||||||||| ||||| | |||| |||||| ||||| | | |||||||||||||||||||||| |||||  |||||||||| ||||    
T  42100413 actgtgtgagagaacttgtgaaaatagcttatgacatagttcaaaaggtgttttcatcttattttcataagttctcaaaaatagcttacgaaa 42100321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 7808607 - 7808540
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcat 220  Q
    |||||||| |||| ||||||||| | |||| | |||||||||||| |||||||||| |||||||||||    
T  7808607 actgtttgggagagcttatgaaaatagcttataacattgttcataagctgttttcagcttattttcat 7808540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 283
Target Start/End: Original strand, 17258856 - 17258982
Alignment:
Q  157 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatag 255  Q
    |||| |||||| ||||||| | |||| |||||| ||||||| |||||||||| |||||||||||||  ||| ||  |||| ||||||||| || |||| |    
T  17258856 tttgggagaacctatgaaaatagcttatgacat-gttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttattg 17258954  T
Q  256 cttgtacgaaaataattgaactttattt 283  Q
     ||||||||||||| ||  |||||||||    
T  17258955 attgtacgaaaatagtttgactttattt 17258982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 36639623 - 36639509
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    |||||||||||||||||| |||| | |||| |||| | || |||| | ||||||| ||||||||||||||  ||| ||| |||||||||||||| ||| |    
T  36639623 actgtttgagagaacttacgaaaattgcttatgacgt-gtccataagttgttttcctcttattttcataagctcttcaagatagcttatgaaaacagtct 36639525  T
Q  252 atagcttgtacgaaaa 267  Q
    ||| |||||| |||||    
T  36639524 ataacttgtatgaaaa 36639509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 1619144 - 1619062
Alignment:
Q  200 ctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 282  Q
    ||||||||| || |||||||||   ||||||||| ||||||||||| || ||||||||| |||| ||| |||| |||||||||    
T  1619144 ctgttttcagctgattttcatatgctctccaaatggcttatgaaaacagcttatagcttatacggaaagaatttaactttatt 1619062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 7319457 - 7319379
Alignment:
Q  204 tttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttat 281  Q
    ||||| |||||||| |||| |||||||| |||||||| ||||| |||||||||||| || ||||| |||| ||||||||    
T  7319457 tttcagcttatttttataagttctccaagatagcttacgaaaacagtttatagcttatatgaaaacaatttaactttat 7319379  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 29925940 - 29925854
Alignment:
Q  156 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatg 241  Q
    ||||| ||||||||||||||   |||| ||||| ||||||| || | |||||| ||||||||||||| |||||||| ||||||||||    
T  29925940 gtttgggagaacttatgaaaacagcttatgacaatgttcatgtgtttttttcaacttattttcataagttctccaatatagcttatg 29925854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 34160807 - 34160713
Alignment:
Q  179 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataatt 272  Q
    |||||||||| ||||||||  ||||||||| ||||||||||||| |||||||| ||| || ||||||| || |||||  || |||||||| ||||    
T  34160807 gcttgtgacactgttcataaactgttttcagcttattttcataagttctccaagatatctaatgaaaatagcttataaattttacgaaaagaatt 34160713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 7319011 - 7319078
Alignment:
Q  188 attgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 254  Q
    ||||| |||| | |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||    
T  7319011 attgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttata 7319078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 7674702 - 7674619
Alignment:
Q  201 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| |||||||||| || |||||||| |||||||||||||| | ||||| |||| || ||||| |||| || |||||||    
T  7674702 tgttttcagcttattttcacaaattctccaagatagcttatgaaaacattttatggcttataagaaaacaatttaaatttattt 7674619  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 37611186 - 37611276
Alignment:
Q  155 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    ||||||||||| |||||||||    ||||||||| |||||||| ||||||||||  |||||| |||||  ||||||| ||||||||||||||    
T  37611186 tgtttgagagagcttatgaaaacaacttgtgaca-tgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37611276  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 37787916 - 37788006
Alignment:
Q  155 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    ||||||||||| |||||||||    ||||||||| |||||||| ||||||||||  |||||| |||||  ||||||| ||||||||||||||    
T  37787916 tgtttgagagagcttatgaaaacaacttgtgaca-tgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 17368770 - 17368685
Alignment:
Q  160 gagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    ||||||||||||||||    ||| |||||| |||||||||| ||||||| ||||||| |||||  ||||||| ||||||||||||||    
T  17368770 gagagaacttatgaaaacaacttatgacat-gttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaaa 17368685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 10640053 - 10639976
Alignment:
Q  155 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaa 232  Q
    |||||| ||||||||||||||   |||| ||||||| |||||| ||| |||  | ||||||||||||| |||||||||    
T  10640053 tgtttgggagaacttatgaaaacagcttatgacatttttcataagctttttctagcttattttcataagttctccaaa 10639976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 25461321 - 25461390
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 258  Q
    |||||||  |||||||||| ||||||||||||| | | |||| |||| ||||||||| ||||||||||||    
T  25461321 tgttcattagctgttttcagcttattttcataaatacgccaagataggttatgaaaacagtttatagctt 25461390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 2563254 - 2563186
Alignment:
Q  211 ttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactt 278  Q
    |||||||||||   ||||||| ||||||| |||||| |||||||||||| ||| |||| ||||||||||    
T  2563254 ttattttcatagactctccaagatagcttgtgaaaatagtttatagcttatacaaaaacaattgaactt 2563186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 6096623 - 6096575
Alignment:
Q  179 gcttgtgacattgttcatatgctgttttcatcttattttcataatttct 227  Q
    ||||||||||||||||||| |||||| ||| || |||||||||| ||||    
T  6096623 gcttgtgacattgttcataagctgttctcagctcattttcataaattct 6096575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 10272447 - 10272519
Alignment:
Q  201 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataatt 272  Q
    |||||||| |||||||||||||  ||||||| || ||||||||||| |  ||||||||| |||||||| ||||    
T  10272447 tgttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaacaatt 10272519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 18637039 - 18637103
Alignment:
Q  204 tttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaa 267  Q
    ||||| |||||||||||||| ||| ||| |||||| ||||||| || ||||||||| ||||||||    
T  18637039 tttcagcttattttcataatatcttcaagatagctaatgaaaatagcttatagcttatacgaaaa 18637103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 32408640 - 32408680
Alignment:
Q  232 atagcttatgaaaaaagtttatagcttgtacgaaaataatt 272  Q
    |||||||||||||| |||||||||||| || ||||||||||    
T  32408640 atagcttatgaaaatagtttatagcttatatgaaaataatt 32408680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 283
Target Start/End: Complemental strand, 35446126 - 35446026
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 282  Q
    ||||||| ||| || ||| |||||| ||||||||||||| ||||||| ||  |||||||| || || ||||||| | ||| |||| |||| |||||||||    
T  35446126 tgacatttttcgtaagcttttttcagcttattttcataagttctccacaaatgcttatgagaagaggttatagcgtatacaaaaacaatttaactttatt 35446027  T
Q  283 t 283  Q
    |    
T  35446026 t 35446026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 40119867 - 40119963
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttt 279  Q
    |||||||||||| | |||||| | |  ||||||||| || || ||||| || ||||||||||| || ||||||||| |||| |||||||| ||||||    
T  40119867 tgacattgttcacaagctgttcttagattattttcacaagttatccaagatcgcttatgaaaacaggttatagcttatacggaaataattcaacttt 40119963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 2735171 - 2735040
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    ||||||||||| |||||||||||  ||||| ||||||| |||||| |||||||||  ||||||||||||| || | ||| || ||||||||||| || ||    
T  2735171 actgtttgagataacttatgaaaacggcttatgacatttttcataagctgttttcggcttattttcataagttgttcaagattgcttatgaaaacagctt 2735072  T
Q  252 atagcttgtacgaaaataattgaactttattt 283  Q
    |||| || ||| ||||||||| ||||||||||    
T  2735071 atagattatacaaaaataatttaactttattt 2735040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 283
Target Start/End: Original strand, 9093528 - 9093655
Alignment:
Q  157 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    |||| |||| ||||||||| | |||| |||||||||| |||  ||||||||| ||||||||| ||| ||||| || | |||||||||||| || ||||||    
T  9093528 tttgtgagagcttatgaaaatagcttatgacattgttaataacctgttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatag 9093627  T
Q  256 cttgtacgaaaataattgaactttattt 283  Q
    ||| |||||||| |||| ||||||||||    
T  9093628 cttatacgaaaacaatttaactttattt 9093655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 31624181 - 31624086
Alignment:
Q  163 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 258  Q
    |||||||||||||   |||| |||||| ||||||| |||||||||| |||||||||||||||||||||| ||||| |||||||| || |||||||||    
T  31624181 agaacttatgaaaacagcttatgacat-gttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatagctt 31624086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 282
Target Start/End: Complemental strand, 13907684 - 13907557
Alignment:
Q  156 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 254  Q
    ||||||||||| ||||||||   |||| |||||||||||| | | | ||||||  ||||||||||||||||||||| || ||||||||||| |  |||||    
T  13907684 gtttgagagaatttatgaaaacagcttctgacattgttcacaagttattttcagtttattttcataatttctccaagatggcttatgaaaacaacttata 13907585  T
Q  255 gcttgtacgaaaataattgaactttatt 282  Q
    | || ||||||| ||| | |||||||||    
T  13907584 ggttatacgaaagtaaattaactttatt 13907557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 9912159 - 9912237
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa 231  Q
    |||||||  ||||||||||||||   |||| |||||||||||||| |||||||| | ||||||||||||| ||||||||    
T  9912159 actgtttcggagaacttatgaaaccagcttatgacattgttcataagctgttttgagcttattttcataagttctccaa 9912237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 31813259 - 31813174
Alignment:
Q  157 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatg 241  Q
    |||| |||||||||||||| | |||| ||| |||||||||| || ||||||| ||||||||||||  |||||||| ||||||||||    
T  31813259 tttgggagaacttatgaaaattgcttatgagattgttcataagccgttttcagcttattttcatatgttctccaagatagcttatg 31813174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 769203 - 769110
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| |||||||||| |||| |||| ||| | ||| |  ||||||||||||| |||||||||||| ||| |||| || | ||||||||||    
T  769203 tgttcataagctgttttcaacttactttcttaagtcctcaagttagcttatgaaaacagtttatagcttatacaaaaaaaaattaactttattt 769110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 34430455 - 34430522
Alignment:
Q  179 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||| |||||||  ||||| ||| |||||| ||||||||||||| |||||||| ||||||||||||||    
T  34430455 gcttatgacatttatcataagcttttttcagcttattttcataacttctccaagatagcttatgaaaa 34430522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 8364990 - 8365076
Alignment:
Q  199 gctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattta 284  Q
    |||||||||| ||||||||||| | ||| |||  |||||||||||||| |||||||| ||| ||  |||| |||||||||| |||||    
T  8364990 gctgttttcagcttattttcatcagttcaccatgatagcttatgaaaacagtttataacttatataaaaacaattgaacttaattta 8365076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 835265 - 835310
Alignment:
Q  201 tgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||    
T  835265 tgttttcagcttattttcataagttctccaagatagcttatgaaaa 835310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 2455090 - 2454991
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttat--gaaaaaagt 249  Q
    |||||||| |||||||| |||||    ||| ||||||||||||||  ||||||||| ||||||||||| | |||||||| ||| |||||  |||||||||    
T  2455090 actgtttgggagaacttctgaaaa---cttatgacattgttcataacctgttttcagcttattttcattagttctccaacataacttatacgaaaaaagt 2454994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 9109252 - 9109325
Alignment:
Q  186 acattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagtttatagctt 258  Q
    |||||||||||| | |||||||| ||||||||||||  ||||||||| ||| | ||||||| || |||||||||    
T  9109252 acattgttcataagttgttttcaccttattttcataggttctccaaattagttaatgaaaacagcttatagctt 9109325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 1625998 - 1625871
Alignment:
Q  157 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    ||||||||||||||||||| | |||| ||||| |||||||| | |||||||| || |||||| ||| |||||||| |||||||||||||| |  |||||     
T  1625998 tttgagagaacttatgaaagtagcttatgacaatgttcataagatgttttcagctgattttcgtaagttctccaagatagcttatgaaaacaacttataa 1625899  T
Q  256 cttgtacgaaaataattgaactttattt 283  Q
    ||| |||||||| |||| ||||||||||    
T  1625898 cttatacgaaaacaatttaactttattt 1625871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 18066218 - 18066099
Alignment:
Q  165 aacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacg 263  Q
    |||||||||||   |||| |||||||| ||||| ||| |||||| ||||||||| ||| |||||||| |||||||||||||| || ||||||||| || |    
T  18066218 aacttatgaaaacagcttatgacattgctcataagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatg 18066119  T
Q  264 aaaataattgaactttattt 283  Q
    |||| |||| ||||||||||    
T  18066118 aaaacaatttaactttattt 18066099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 279
Target Start/End: Complemental strand, 26626975 - 26626848
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    ||||| || ||||||||| |||| | |||| ||||||||||||||  |||||||||  |||||||||||| |||| ||| |||||||||||||| || ||    
T  26626975 actgtatgggagaacttacgaaaatagcttatgacattgttcataatctgttttcaggttattttcataagttctgcaagatagcttatgaaaacagctt 26626876  T
Q  252 atagcttgtacgaaaataattgaacttt 279  Q
     |||||| |||||||| |||| ||||||    
T  26626875 ctagcttatacgaaaacaatttaacttt 26626848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 40682365 - 40682455
Alignment:
Q  155 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaa 245  Q
    |||||| |||||||| | ||| | |||| |||||||||||||| | |||||||| ||||||||||||| ||||| | ||| ||||||||||    
T  40682365 tgtttgggagaacttgttaaaatagcttatgacattgttcataagttgttttcaacttattttcataagttctcaagatatcttatgaaaa 40682455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 8017477 - 8017409
Alignment:
Q  212 tattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttt 279  Q
    ||||||||||| |||||||| |||||||||||||| |||||| ||||| || |||||||||| ||||||    
T  8017477 tattttcataagttctccaagatagcttatgaaaacagtttacagcttatatgaaaataatttaacttt 8017409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 271
Target Start/End: Complemental strand, 2142802 - 2142636
Alignment:
Q  107 ttggattgacttatttaaatttatcaacttgcgtaagttctatcgaactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgtttt 206  Q
    |||| ||||||||||| | |||||| || ||| |||||| |||   |||||||| ||||||||||||||     |||||||| |||||||  ||||||||    
T  2142802 ttggtttgacttatttgagtttatctacatgcataagttttatgagactgtttgggagaacttatgaaaacaagttgtgacaatgttcattagctgtttt 2142703  T
Q  207 catcttattttcataatttctcc--aaatagcttatgaaaaaagtttatagcttgtacgaaaataat 271  Q
     | ||||||||||||| ||||||  | |||  ||||||||| |  ||||||||| ||| ||||||||    
T  2142702 tagcttattttcataaattctcccaagataaattatgaaaacaacttatagcttatacaaaaataat 2142636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 750762 - 750680
Alignment:
Q  163 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaa 244  Q
    |||||||||||||   |||  |||||||||||||| |||||||| | ||||||| ||||| |||||||| |||||||||||||    
T  750762 agaacttatgaaaagagctaatgacattgttcataagctgttttgagcttatttgcataagttctccaagatagcttatgaaa 750680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 680558 - 680485
Alignment:
Q  200 ctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataatt 272  Q
    ||||||||| |||||||||| || |||| ||| |||||||||||||| || ||||||||| |||||||| ||||    
T  680558 ctgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttatacgaaaacaatt 680485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 12464491 - 12464572
Alignment:
Q  203 ttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||| |||||||||| || |||||||| |||||||||||||| || ||||||| | ||| |||| |||| ||||||||||    
T  12464491 ttttcagcttattttcacaagttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaatttaactttattt 12464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 26143608 - 26143740
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    |||||||| ||||||||| ||||    ||| || ||||||||| | | | |||||| ||||||||||||| ||||||||  ||||||||||||| || ||    
T  26143608 actgtttgggagaacttacgaaaacaacttatgtcattgttcacaggttattttcagcttattttcataagttctccaagttagcttatgaaaacagctt 26143707  T
Q  252 atag-cttgtacgaaaataattgaactttattt 283  Q
    | ||  || |||||| |||||||||||||||||    
T  26143708 acagttttttacgaatataattgaactttattt 26143740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 40279476 - 40279416
Alignment:
Q  186 acattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    ||||||| ||||  ||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  40279476 acattgtccataaactgttttcaacttattttcataagttctccaatatagcttatgaaaa 40279416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 16451217 - 16451118
Alignment:
Q  156 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 254  Q
    ||||| ||||||||||||||    ||| |||||||||||||  |||||||||| ||||||||||  | |||||||| |||||||| ||||| || |||||    
T  16451217 gtttgggagaacttatgaaaacaacttatgacattgttcatgagctgttttcagcttattttcacgagttctccaagatagcttacgaaaacagcttata 16451118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 18962042 - 18962137
Alignment:
Q  190 tgttcatatgctgttttcatctt-attttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    ||||||| ||||||||||| ||| |||| |||| | ||||||  |||||||||||||| |||||||||||| || ||||| | || ||||||||||    
T  18962042 tgttcatgtgctgttttcagctttatttccatagtctctccatgatagcttatgaaaatagtttatagcttatatgaaaacagtttaactttattt 18962137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 28039336 - 28039431
Alignment:
Q  189 ttgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    ||||||||| |||||||||| ||||||| ||||| || ||||| | ||||||||||||  | |||||| || || ||||| ||||| |||||||||    
T  28039336 ttgttcataagctgttttcagcttatttccataacttttccaagaaagcttatgaaaattgcttatagtttatatgaaaacaattggactttattt 28039431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 40279335 - 40279276
Alignment:
Q  187 cattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||||||||||  ||||||||| || |||||||||| |||||||| ||||||||||||||    
T  40279335 cattgttcataaactgttttcagctaattttcataagttctccaatatagcttatgaaaa 40279276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 40279405 - 40279346
Alignment:
Q  187 cattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||||||||||  ||||||||| || |||||||||| |||||||| ||||||||||||||    
T  40279405 cattgttcataaactgttttcagctaattttcataagttctccaatatagcttatgaaaa 40279346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 7928299 - 7928345
Alignment:
Q  185 gacattgttcatatgctgttttcatcttattttcataatttctccaa 231  Q
    ||||||||||||| | |||||||| ||||||||||||| ||||||||    
T  7928299 gacattgttcataagttgttttcagcttattttcataagttctccaa 7928345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 12313178 - 12313272
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| | || ||||| |||||||||||||  ||||||| |||||||||| ||| | ||| ||||||  || ||||||||| ||||||||||    
T  12313178 tgttcataagttgatttcaccttattttcataagctctccaagatagcttatgtaaacaatttgtagcttaaacaaaaataatttaactttattt 12313272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 16398185 - 16398123
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||||||| || || |||||||||| ||||||||||||| |||||||| ||| ||||||||||    
T  16398185 tgacattgctcgtaagctgttttcagcttattttcataagttctccaacataacttatgaaaa 16398123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 43868289 - 43868331
Alignment:
Q  201 tgttttcatcttattttcataatttctccaaatagcttatgaa 243  Q
    |||||| | ||||||||||||| ||||||||||||||||||||    
T  43868289 tgtttttagcttattttcataagttctccaaatagcttatgaa 43868331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 45229610 - 45229520
Alignment:
Q  156 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    ||||| ||||||||||||||    ||| ||||||| |||||  ||| |||||| ||||||||||||| ||||| || ||||||||||||||    
T  45229610 gtttgggagaacttatgaaaagaccttatgacatttttcattagcttttttcagcttattttcataagttctcgaagatagcttatgaaaa 45229520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 10646297 - 10646350
Alignment:
Q  193 tcatatgctgttttcatcttattttcataatttctc-caaatagcttatgaaaa 245  Q
    ||||| || ||||||||||||||||||||| |||||  ||||||||||||||||    
T  10646297 tcataagcagttttcatcttattttcataagttctctaaaatagcttatgaaaa 10646350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 15978039 - 15977994
Alignment:
Q  201 tgttttcatcttattttcataatttctcc-aaatagcttatgaaaa 245  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||    
T  15978039 tgttttcagcttattttcataatctctccaaaatagcttatgaaaa 15977994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 33319830 - 33319883
Alignment:
Q  203 ttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    |||||| ||||||||||||| |||||||| |||| ||||||||| |||||||||    
T  33319830 ttttcagcttattttcataagttctccaagatagtttatgaaaacagtttatag 33319883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 35379020 - 35379077
Alignment:
Q  189 ttgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    ||||||||| | |||||||| |||||||||||||  ||||||| ||||||||||||||    
T  35379020 ttgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaa 35379077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 36043974 - 36043881
Alignment:
Q  185 gacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaact 277  Q
    ||||||||||||| |||||||| | || | ||||||||  ||||||| ||| || ||||| | |||||||||||| |||||||| |||| ||||    
T  36043974 gacattgttcataagctgtttttagctcaatttcataagctctccaagataactaatgaagacagtttatagcttatacgaaaacaatttaact 36043881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 40279265 - 40279168
Alignment:
Q  187 cattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||||||  || |||||| || |||||||||| |||||||| |||||||||||||| |  ||||| ||| ||| |||| |||| ||||| ||||    
T  40279265 cattgttcataaactattttcagctaattttcataagttctccaacatagcttatgaaaacaacttatatcttataccaaaacaatttaacttcattt 40279168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 283
Target Start/End: Complemental strand, 3611297 - 3611197
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 282  Q
    ||||||| ||||||  ||||||| | ||||||||||||| |||||||| ||||||| |||||| ||| ||||   | ||| |||| |||| |||||||||    
T  3611297 tgacattattcataaactgtttttagcttattttcataagttctccaagatagcttgtgaaaacagtctataaactatacaaaaacaatttaactttatt 3611198  T
Q  283 t 283  Q
    |    
T  3611197 t 3611197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 9174886 - 9174814
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    |||||||||||||| ||| |||||| |||||||||||||  |||  || |||||||||||||| || ||||||    
T  9174886 tgacattgttcataagctattttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatag 9174814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 21788385 - 21788341
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctc 228  Q
    ||||||||||||| || |||||||| ||||||||||||| |||||    
T  21788385 tgacattgttcatttgttgttttcaacttattttcataagttctc 21788341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 43511151 - 43511111
Alignment:
Q  189 ttgttcatatgctgttttcatcttattttcataatttctcc 229  Q
    ||||||||| |||||||||| ||||||||||||| ||||||    
T  43511151 ttgttcataagctgttttcagcttattttcataagttctcc 43511111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 20526548 - 20526417
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagttt 251  Q
    |||||||||||||||||||||||   | || | ||||| ||| || |||||||| | ||||||||||| | ||||||||| ||||||||||||| || ||    
T  20526548 actgtttgagagaacttatgaaaacagtttatcacatttttcgtaagctgtttttagcttattttcattagttctccaaaatagcttatgaaaacagctt 20526449  T
Q  252 atagcttgtacgaaaataattgaactttattt 283  Q
    ||||| ||||| || |||||| ||||||||||    
T  20526448 atagcatgtacaaacataatttaactttattt 20526417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 39968013 - 39967891
Alignment:
Q  162 gagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctc-caaatagcttatgaaaaaagtttatagcttgt 260  Q
    ||||||||||||||   |||| || ||||||||||| |||||||||| ||||||||||| | ||||| || |||||||||||||| |  |||||||| ||    
T  39968013 gagaacttatgaaaacagcttatggcattgttcataagctgttttcaacttattttcattagttctctcagatagcttatgaaaacaacttatagctagt 39967914  T
Q  261 acgaaaataattgaactttattt 283  Q
    ||||||| |||| || |||||||    
T  39967913 acgaaaacaatttaagtttattt 39967891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 36517650 - 36517579
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 254  Q
    |||||||||||||| ||| ||||||  ||||||||||||||||||||| |||||||||||||| ||||||||    
T  36517650 tgacattgttcataagctattttcagtttattttcataatttctccaagatagcttatgaaaatagtttata 36517579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 39393603 - 39393665
Alignment:
Q  210 cttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataatt 272  Q
    ||||||||||||| ||||||||||||||||||||||||  ||||||||  ||| |||||||||    
T  39393603 cttattttcataagttctccaaatagcttatgaaaaaaacttatagctcatacaaaaataatt 39393665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 280
Target Start/End: Complemental strand, 33678927 - 33678754
Alignment:
Q  108 tggattgacttatttaaatttatcaacttgcgtaagttctatcgaactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttc 207  Q
    ||||||| |||||||||| ||||| |||||| |||||| | |   ||  |||| ||||||||||||||    ||| | |||||||||||  | |||||||    
T  33678927 tggattggcttatttaaacttatctacttgcataagttttgtgagacaatttgggagaacttatgaaaacaacttataacattgttcatgagatgttttc 33678828  T
Q  208 atcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttta 280  Q
    | |||||||||| || || ||||| |||||||||||||| || ||||||||| ||| ||||  ||| |||||||    
T  33678827 aacttattttcacaagttttccaagatagcttatgaaaacagcttatagcttttacaaaaaccatttaacttta 33678754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 40688993 - 40689085
Alignment:
Q  192 ttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||| |||||||| | ||||||||||||| || ||||  |||||||||||| | || ||||||||| || |||||||||| ||||||||||    
T  40688993 ttcataagctgttttgagcttattttcataagttatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaactttattt 40689085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 39907903 - 39907774
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    ||||||||||||||||| | ||||  |||| || || |||||||  |||||||||| ||||||||||| | ||||| || |||| ||||||||| |||||    
T  39907903 actgtttgagagaacttgtaaaatgagcttatg-ca-tgttcattagctgttttcagcttattttcattagttctctaagatagtttatgaaaacagttt 39907806  T
Q  252 atagcttgtacgaaaataattgaactttattt 283  Q
    ||||||| ||| |||| |||| ||| ||||||    
T  39907805 atagcttatacaaaaacaatttaaccttattt 39907774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 44822013 - 44821930
Alignment:
Q  201 tgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||| || ||||| ||| ||| |||| ||||  |||||||||    
T  44822013 tgttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaaaaacaatttgactttattt 44821930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 20526897 - 20527011
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagttt 251  Q
    |||||||||||||||| ||||||   |||| ||| |||||| ||| | | |||||| ||||||||||||| |||| ||  |||||||||||||| || ||    
T  20526897 actgtttgagagaactgatgaaaacagcttatgagattgtttataagatcttttcagcttattttcataagttctacactatagcttatgaaaacagctt 20526996  T
Q  252 atagcttgtacgaaa 266  Q
     |||||| |||||||    
T  20526997 gtagcttttacgaaa 20527011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 25596087 - 25596032
Alignment:
Q  201 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    |||||||| |||||||||||||  ||||||| |||||||||||||| |||||||||    
T  25596087 tgttttcaacttattttcataagctctccaagatagcttatgaaaagagtttatag 25596032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 34036009 - 34035926
Alignment:
Q  163 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    ||||||||||||| |  ||| |||||||||||||| | |||||||| |||||||||  || ||||| || ||||||||||||||    
T  34036009 agaacttatgaaaataacttatgacattgttcataagttgttttcaacttattttcgcaagttctctaagatagcttatgaaaa 34035926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 279
Target Start/End: Complemental strand, 17248654 - 17248530
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagttta 252  Q
    |||||||| |||||||||| |||   |||| | |||||||||||| |||| ||| | ||||||||||||| |||| | || | |||||||||| || |||    
T  17248654 actgtttgggagaacttataaaaacagcttataacattgttcataagctgattt-accttattttcataagttct-ctaagatcttatgaaaagagctta 17248557  T
Q  253 tagcttgtacgaaaataattgaacttt 279  Q
    |||||| ||| |||| |||| ||||||    
T  17248556 tagcttatacaaaaacaatttaacttt 17248530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 44989645 - 44989739
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgtttt-catcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||||||| || |||||||||||    ||| |||||||||||| | |||||||| || |||||||||||||||||| ||| ||| ||||||||||    
T  44989645 actgtttgggaaaacttatgaaaacaacttctgacattgttcacaagctgttttgcagcttattttcataatttctacaagatatcttatgaaaa 44989739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 47177681 - 47177611
Alignment:
Q  210 cttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttt 279  Q
    ||||||||||||| |||||||| ||||||| |||||| || ||||||||| || ||||| |||| ||||||    
T  47177681 cttattttcataaattctccaagatagcttttgaaaacagcttatagcttatatgaaaacaatttaacttt 47177611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 12110404 - 12110331
Alignment:
Q  211 ttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||||||| |||| ||| |||||||||||||| || ||||||||| ||| |||| ||||  |||||||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaacagcttatagcttataccaaaacaatttgactttattt 12110331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 22283758 - 22283843
Alignment:
Q  199 gctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||||| ||||||| ||||| ||||| || || | ||||||||| |||||||||||  ||| |||| |||| ||||||||||    
T  22283758 gctgttttcagcttatttccataagttctctaagatggtttatgaaaacagtttatagctgatacaaaaacaatttaactttattt 22283843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 43648292 - 43648227
Alignment:
Q  203 ttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaa 267  Q
    |||||| |||||||||||| ||||||||| |||||||||||||| || ||||| | | ||||||||    
T  43648292 ttttcaacttattttcatattttctccaagatagcttatgaaaacagcttatatcatatacgaaaa 43648227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 283
Target Start/End: Complemental strand, 1706721 - 1706593
Alignment:
Q  156 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 254  Q
    ||||||||||| ||||||||   |||| || ||||||||||| ||| ||| || |||||||||||||  | ||||| |||| ||||||||| || |||||    
T  1706721 gtttgagagaaattatgaaaacagcttatggcattgttcataagctatttccaacttattttcataagctgtccaagatagtttatgaaaacagcttata 1706622  T
Q  255 gcttgtacgaaaataattgaactttattt 283  Q
    |||| |||||||| |||||||| ||||||    
T  1706621 gcttctacgaaaacaattgaacattattt 1706593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 22662112 - 22661980
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaa-aaaagtt 250  Q
    |||||||| | |||||||||||||  | || |||||||| ||||  | |||||||  |||||| |||||| |||||||  |||||||||||| ||||| |    
T  22662112 actgtttgggggaacttatgaaatcagtttatgacattgatcatgagttgttttctgcttattgtcataagttctccatgatagcttatgaagaaaagct 22662013  T
Q  251 tatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| |||| ||| |||||||||||||||    
T  22662012 tatagcttatacgtaaaaaattgaactttattt 22661980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 22666591 - 22666459
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaa-gtt 250  Q
    |||||||| | |||||||||||||  | || |||||||| ||||  | |||||||  |||||| |||||| |||||||  |||||||||||||||| | |    
T  22666591 actgtttgggggaacttatgaaatcagtttatgacattgatcatgagttgttttctgcttattgtcataagttctccatgatagcttatgaaaaaaagct 22666492  T
Q  251 tatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| |||| ||| |||||||||||||||    
T  22666491 tatagcttatacgtaaaaaattgaactttattt 22666459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 28300315 - 28300398
Alignment:
Q  201 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| |||||||||||||  ||| ||| ||||| |||||||| |||||||||||| ||| |||| |||| ||||||||||    
T  28300315 tgttttcaacttattttcataagctcttcaagatagcctatgaaaatagtttatagcttatacaaaaacaatttaactttattt 28300398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 51630165 - 51630082
Alignment:
Q  201 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| ||||||||||||| |||| ||| |||||||||||||| || ||||||||| ||  |||| |||| ||||||||||    
T  51630165 tgttttcagcttattttcataaattcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaatttaactttattt 51630082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 55414414 - 55414492
Alignment:
Q  179 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagc 256  Q
    |||| ||||||| |||||| ||| |||||| ||||||||||||| |||||||| ||| |||||||||| | ||||||||    
T  55414414 gcttatgacatttttcataagcttttttcaacttattttcataagttctccaagataacttatgaaaacaatttatagc 55414492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 3155671 - 3155574
Alignment:
Q  187 cattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| ||  ||||||||| ||||||||||| | |||| ||| |||| ||||||||| || || |||||||||| |||| |||| ||||||||||    
T  3155671 cattgttcgtaaactgttttcagcttattttcattagttcttcaagatagtttatgaaaacagcttgtagcttgtacaaaaacaatttaactttattt 3155574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 17822842 - 17822926
Alignment:
Q  162 gagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||||| |||||||   |||| ||||||| |||||| ||| |||| | ||||||||||||| |||||||| ||||||||||||||    
T  17822842 gagaacatatgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaa 17822926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 24169361 - 24169261
Alignment:
Q  157 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    ||||||||||||| | ||| | |||| ||||||| |||||| | | |||||| |||||||||||||  ||||||| ||||||| |||||| | |||||||    
T  24169361 tttgagagaacttttaaaaatagcttatgacatttttcataagattttttcaacttattttcataagctctccaagatagcttgtgaaaacattttatag 24169262  T
Q  256 c 256  Q
    |    
T  24169261 c 24169261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 40174633 - 40174537
Alignment:
Q  185 gacattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttta 280  Q
    |||||||| ||||  ||||||||| |||||| ||| || ||||||||  ||||||||||||| || ||||||||| || ||||| |||| |||||||    
T  40174633 gacattgtccataaactgttttcaacttattatcacaagttctccaatgtagcttatgaaaacagcttatagcttttatgaaaacaatttaacttta 40174537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 48719362 - 48719428
Alignment:
Q  155 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataa 222  Q
    |||||||| |||||||||||| ||| || |||||| |||| || |||||||||| |||||||||||||    
T  48719362 tgtttgagggaacttatgaaaatggtttatgacat-gttcgtaagctgttttcagcttattttcataa 48719428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 825505 - 825551
Alignment:
Q  200 ctgttttcatcttattttcataatttctcc-aaatagcttatgaaaa 245  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||    
T  825505 ctgttttcagcttattttcataagttctccaaaatagcttatgaaaa 825551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 35571636 - 35571714
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaa 267  Q
    |||||||  |||| ||||| |||||||||| || ||||| || |||||||||||||| || ||||||||| ||||||||    
T  35571636 tgttcatgagctggtttcaacttattttcacaagttctctaagatagcttatgaaaacagcttatagcttatacgaaaa 35571714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 43932489 - 43932431
Alignment:
Q  201 tgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagctt 258  Q
    ||||||||||||||||||| || |||| || |||| |||||||||| ||||||||||||    
T  43932489 tgttttcatcttattttcacaagttcttcagaataacttatgaaaatagtttatagctt 43932431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 24091481 - 24091433
Alignment:
Q  236 cttatgaaaaaagtttatagcttgtacgaaaataattgaactttattta 284  Q
    |||||||||| |||||||||||| || ||||||||||  ||||||||||    
T  24091481 cttatgaaaacagtttatagcttatatgaaaataatttgactttattta 24091433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 49939929 - 49939981
Alignment:
Q  163 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttatt 215  Q
    |||||||||||||   |||| |||||||||||||| |||||||||| ||||||    
T  49939929 agaacttatgaaaagagcttatgacattgttcataagctgttttcagcttatt 49939981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 54392836 - 54392920
Alignment:
Q  202 gttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatttat 285  Q
    ||||||| |||||||||| ||||||||||| ||| ||||| |||| || | ||||| | ||| |||| |||| ||||||||||||    
T  54392836 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatacaaaaacaatttaactttatttat 54392920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 284
Target Start/End: Complemental strand, 4576906 - 4576775
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 251  Q
    ||||||||||| ||||||||||| | | || |||||| ||| ||| | ||| |||| ||||||||||||| || | ||| |||||||||||||| || ||    
T  4576906 actgtttgagacaacttatgaaaatagtttatgacat-gtttataagttgtgttcagcttattttcataagttattcaatatagcttatgaaaacagctt 4576808  T
Q  252 atagcttgtacgaaaataattgaactttattta 284  Q
    ||| ||||||| |||||| || |||||||||||    
T  4576807 ataacttgtacaaaaatattttaactttattta 4576775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 45975759 - 45975675
Alignment:
Q  186 acattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaata 269  Q
    ||||| |||||| |||||||||| ||||||||||||| |||||||| |||||||||||||| || || |||||| ||| ||||||    
T  45975759 acattattcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaacagcttgtagcttatacaaaaata 45975675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 283
Target Start/End: Original strand, 10199381 - 10199507
Alignment:
Q  157 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagtttatag 255  Q
    |||| ||||||| |||||| | |||| |||||| ||||||| | |||||||| |||||||||||||  |||| ||| |||||||||||||||| |||| |    
T  10199381 tttgggagaactcatgaaaatagcttatgacat-gttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaaagcttatcg 10199479  T
Q  256 cttgtacgaaaataattgaactttattt 283  Q
     || |||||||||| ||  |||||||||    
T  10199480 attatacgaaaatagtttgactttattt 10199507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 7136970 - 7137083
Alignment:
Q  156 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 254  Q
    |||||| ||||||||||||| | |||| ||||||  |||||| | | |||||| ||||||||||||| |||||||| |||||||||||||| || |||||    
T  7136970 gtttgaaagaacttatgaaaatcgcttatgacata-ttcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T
Q  255 gcttgtacgaaaata 269  Q
    | || ||| ||||||    
T  7137069 gattatacaaaaata 7137083  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 283
Target Start/End: Complemental strand, 9656713 - 9656621
Alignment:
Q  192 ttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||| |||||||| | |||||||||||||||  ||||  |||||||||||| | || ||||||||| || |||||||||| ||||||||||    
T  9656713 ttcataagctgttttgagcttattttcataattcatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaactttattt 9656621  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 11941364 - 11941296
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcata 221  Q
    |||||||| |||| ||||||||| | |||| | |||||||||||| |||||||||| ||||||||||||    
T  11941364 actgtttgggagagcttatgaaaatagcttataacattgttcataagctgttttcagcttattttcata 11941296  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 283
Target Start/End: Original strand, 24915050 - 24915150
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 282  Q
    ||||||| |||||| ||| |||||| |||||||||| || |||||||| | |||||||||||| || ||||||| | ||| |||| |||| |||||||||    
T  24915050 tgacatttttcataagcttttttcaacttattttcacaagttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaatttaactttatt 24915149  T
Q  283 t 283  Q
    |    
T  24915150 t 24915150  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 51695496 - 51695556
Alignment:
Q  186 acattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 245  Q
    |||||||||||| ||| |||||| ||||||||||||| |||||||| ||||||||||||||    
T  51695496 acattgttcataagctattttcagcttattttcataaattctccaagatagcttatgaaaa 51695556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 27820337 - 27820436
Alignment:
Q  185 gacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    ||||||||||||| ||| |||||| ||||||||||||| |||||||| ||||||||| |||| ||  |||||||| |||  ||| |||| | ||||||||    
T  27820337 gacattgttcataagctattttcagcttattttcataaattctccaagatagcttataaaaacagcatatagcttatacataaacaatttagctttattt 27820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 283
Target Start/End: Original strand, 3887601 - 3887731
Alignment:
Q  154 ctgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctcc-aaatagcttatgaaaaaagttta 252  Q
    |||||||  |||||||||||||    ||| |||||||||||||| |||||||| | ||||||||||||| |||||| |  |||||| | |||  || |||    
T  3887601 ctgtttggaagaacttatgaaaacatcttatgacattgttcataagctgtttttaacttattttcataagttctcctagctagcttgtaaaatcagctta 3887700  T
Q  253 tagcttgtacgaaaataattgaactttattt 283  Q
    ||||| ||| |||| ||||| ||||||||||    
T  3887701 tagctcgtaagaaattaatttaactttattt 3887731  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 7941708 - 7941615
Alignment:
Q  153 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctcc-aaatagcttatgaaaa 245  Q
    ||||||||  |||| ||||||||   |||| |||||||||||  | ||| |||||| ||||||||||||| |||||| ||||||||||||||||    
T  7941708 actgtttggaagaatttatgaaaacagcttatgacattgttccgaagctattttcaacttattttcataagttctccgaaatagcttatgaaaa 7941615  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 283
Target Start/End: Original strand, 39976177 - 39976312
Alignment:
Q  152 aactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttca---tcttattttcataatttctcc-aaatagcttatgaaaaaa 247  Q
    |||||||||||||||||||||||| |   || |||||||||||| | ||| | ||||   | |||||||||||| ||| || |||||||||||||||| |    
T  39976177 aactgtttgagagaacttatgaaaataatttatgacattgttcacacgctttattcaggttattattttcataagttccccaaaatagcttatgaaaata 39976276  T
Q  248 gtttatagcttgtacgaaaataattgaactttattt 283  Q
    || |||||||| |||  ||| || | ||||||||||    
T  39976277 gtgtatagcttatacagaaacaaatcaactttattt 39976312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 283
Target Start/End: Complemental strand, 34290299 - 34290207
Alignment:
Q  192 ttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||| | |||||||| ||||||||||||| |||| ||| |||||||||||||| || ||||||||| ||| |||  || | ||||||||||    
T  34290299 ttcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagcttatacaaaataaaattaactttattt 34290207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 35179200 - 35179125
Alignment:
Q  194 catatgctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagcttgtacgaaaat 268  Q
    |||| |||||||||| ||||||||||||| ||||||| |||| |||||||||| || ||||| |||  ||||||||    
T  35179200 cataagctgttttcagcttattttcataagttctccataataacttatgaaaacagcttataacttaaacgaaaat 35179125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 38503464 - 38503511
Alignment:
Q  184 tgacattgttcatatgctgttttcatcttattttcataatttctccaa 231  Q
    |||||||||||||| | |||||||| ||||||||||||| ||||||||    
T  38503464 tgacattgttcataagttgttttcagcttattttcataagttctccaa 38503511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 47498809 - 47498876
Alignment:
Q  155 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataa 222  Q
    |||||| |||||||||||||| | |||| ||| |||||||||| | |||||| | |||||||||||||    
T  47498809 tgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataa 47498876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 10744366 - 10744300
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    |||||||| ||||||||||||||||||| |||| ||||| || | |||||||||||| || ||||||    
T  10744366 tgttcataagctgttttcatcttatttttataagttctctaagacagcttatgaaaacagcttatag 10744300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 31517745 - 31517839
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||| |||||||||| |||||||||||||  ||||||| | || ||||||| | || ||||||||| || ||||  |||| ||||||||||    
T  31517745 tgttcataagctgttttcagcttattttcataagctctccaagacagattatgaagacagcttatagcttatatgaaatcaatttaactttattt 31517839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 31918289 - 31918235
Alignment:
Q  218 cataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataatt 272  Q
    ||||| ||||| || |||||||||||||||  ||||||||| |||||||||||||    
T  31918289 cataagttctcaaattagcttatgaaaaaatcttatagcttatacgaaaataatt 31918235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 49888812 - 49888738
Alignment:
Q  210 cttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    ||||||||||||| ||||| || |||||||||||||| |  | ||||||| |||||||| |||| ||||||||||    
T  49888812 cttattttcataagttctctaagatagcttatgaaaacaactaatagcttatacgaaaacaattaaactttattt 49888738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 7218088 - 7218173
Alignment:
Q  199 gctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    |||||||||| ||||||||||||| |||||||  |||| ||||||||| |  ||||||||| || ||||| ||||  |||||||||    
T  7218088 gctgttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 7218173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 14629971 - 14630040
Alignment:
Q  190 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 258  Q
    |||||||| | |||||||| ||||||| |||||  ||||||| |||||||||||||| || |||||||||    
T  14629971 tgttcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaatagcttatagctt 14630040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 32113714 - 32113657
Alignment:
Q  199 gctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 255  Q
    |||||||||| |||||||||||||  ||||||| ||| |||||||||| |||||||||    
T  32113714 gctgttttcagcttattttcataaaatctccaacataacttatgaaaacagtttatag 32113657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 38882915 - 38882972
Alignment:
Q  188 attgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaa 245  Q
    |||||||||| | |||||||| ||||||||||||| ||||| | | ||||||||||||    
T  38882915 attgttcataaggtgttttcaacttattttcataagttctctagagagcttatgaaaa 38882972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 48830123 - 48830175
Alignment:
Q  231 aatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    ||||||||||||||| |||||||||||| || ||||||| ||  |||||||||    
T  48830123 aatagcttatgaaaacagtttatagcttatatgaaaatagtttgactttattt 48830175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 178342 - 178424
Alignment:
Q  202 gttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 283  Q
    ||||||| ||||||||||||| ||||| || || |||| |||||| || | ||||||| ||||| ||||||| ||||||||||    
T  178342 gttttcagcttattttcataagttctcaaagatggcttgtgaaaacagctaatagcttatacgacaataatttaactttattt 178424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 50889 - 50852
Alignment:
Q  210 cttattttcataatttctccaaatagcttatgaaaaaa 247  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  50889 cttattttcataagttctccaaataacttatgaaaaaa 50852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 21311 - 21355
Alignment:
Q  211 ttattttcataatttctccaa-atagcttatgaaaaaagtttata 254  Q
    ||||||||||||||||||||| |||||||||||||| || |||||    
T  21311 ttattttcataatttctccaatatagcttatgaaaacagcttata 21355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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