View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_40 (Length: 289)

Name: NF1504_1D_low_40
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_40
NF1504_1D_low_40
[»] chr3 (15 HSPs)
chr3 (92-191)||(48648218-48648317)
chr3 (92-190)||(30222038-30222136)
chr3 (28-93)||(7723980-7724045)
chr3 (118-191)||(51827433-51827506)
chr3 (32-93)||(7725648-7725709)
chr3 (113-190)||(11651335-11651412)
chr3 (113-183)||(41458781-41458851)
chr3 (34-93)||(51469674-51469733)
chr3 (28-93)||(9299762-9299827)
chr3 (135-191)||(6974685-6974741)
chr3 (25-93)||(9299255-9299323)
chr3 (92-148)||(48649155-48649211)
chr3 (35-78)||(37538987-37539030)
chr3 (99-195)||(2092845-2092940)
chr3 (92-148)||(51826552-51826608)
[»] chr2 (11 HSPs)
chr2 (96-195)||(9540968-9541067)
chr2 (92-185)||(9540346-9540439)
chr2 (113-191)||(34812047-34812124)
chr2 (92-185)||(20632854-20632947)
chr2 (24-65)||(43992368-43992409)
chr2 (29-93)||(3130189-3130253)
chr2 (101-183)||(8541775-8541857)
chr2 (28-77)||(15602461-15602510)
chr2 (36-93)||(37911546-37911603)
chr2 (126-166)||(20630257-20630297)
chr2 (45-93)||(39738853-39738901)
[»] chr4 (25 HSPs)
chr4 (92-190)||(4379970-4380068)
chr4 (113-191)||(24157936-24158014)
chr4 (108-183)||(31328833-31328908)
chr4 (28-93)||(35318344-35318409)
chr4 (28-94)||(52305821-52305887)
chr4 (33-93)||(48339550-48339610)
chr4 (30-93)||(35317629-35317692)
chr4 (120-190)||(5590971-5591041)
chr4 (120-190)||(48127329-48127399)
chr4 (34-79)||(25092834-25092879)
chr4 (28-77)||(50464294-50464343)
chr4 (28-93)||(56459739-56459804)
chr4 (92-156)||(24158794-24158858)
chr4 (28-99)||(52206408-52206479)
chr4 (106-172)||(4380648-4380714)
chr4 (107-177)||(43145985-43146055)
chr4 (92-172)||(53772822-53772902)
chr4 (113-192)||(17447718-17447797)
chr4 (36-79)||(31907684-31907727)
chr4 (59-93)||(39819417-39819451)
chr4 (28-65)||(30610254-30610291)
chr4 (28-93)||(48339767-48339832)
chr4 (16-93)||(49999553-49999630)
chr4 (29-65)||(33960532-33960568)
chr4 (41-93)||(56458990-56459042)
[»] chr6 (8 HSPs)
chr6 (121-289)||(13255062-13255228)
chr6 (111-279)||(10927068-10927239)
chr6 (113-192)||(10926177-10926256)
chr6 (108-191)||(33435370-33435453)
chr6 (99-166)||(20833317-20833385)
chr6 (92-166)||(20833930-20834004)
chr6 (28-65)||(1825514-1825551)
chr6 (92-148)||(33436255-33436311)
[»] chr7 (9 HSPs)
chr7 (99-190)||(31954233-31954324)
chr7 (28-94)||(11698138-11698204)
chr7 (121-190)||(31955157-31955226)
chr7 (28-93)||(47361206-47361271)
chr7 (36-93)||(4181037-4181094)
chr7 (28-93)||(47362055-47362120)
chr7 (28-79)||(3233391-3233442)
chr7 (35-79)||(7562044-7562088)
chr7 (29-65)||(47362757-47362793)
[»] chr8 (11 HSPs)
chr8 (28-79)||(42104428-42104479)
chr8 (28-94)||(42104511-42104577)
chr8 (113-183)||(531422-531492)
chr8 (28-74)||(8742050-8742096)
chr8 (16-93)||(35751610-35751687)
chr8 (28-79)||(5664264-5664315)
chr8 (28-99)||(29703475-29703546)
chr8 (35-93)||(1283344-1283402)
chr8 (29-79)||(10776810-10776860)
chr8 (59-99)||(31042737-31042777)
chr8 (41-93)||(34190759-34190811)
[»] chr5 (16 HSPs)
chr5 (120-191)||(31036082-31036153)
chr5 (92-190)||(22799699-22799797)
chr5 (113-190)||(41045419-41045496)
chr5 (86-190)||(31082683-31082787)
chr5 (24-93)||(24252320-24252389)
chr5 (34-79)||(30667427-30667472)
chr5 (28-93)||(34064866-34064931)
chr5 (28-92)||(14394667-14394731)
chr5 (92-190)||(19366505-19366603)
chr5 (92-207)||(29088538-29088655)
chr5 (28-93)||(7120890-7120955)
chr5 (92-149)||(19360456-19360513)
chr5 (41-73)||(39998596-39998628)
chr5 (92-154)||(19359718-19359780)
chr5 (41-93)||(34064114-34064166)
chr5 (31-79)||(36423198-36423246)
[»] chr1 (12 HSPs)
chr1 (99-190)||(25671964-25672055)
chr1 (107-190)||(50271723-50271806)
chr1 (24-79)||(26779710-26779765)
chr1 (28-93)||(19402339-19402404)
chr1 (99-190)||(40022171-40022262)
chr1 (29-79)||(50804029-50804079)
chr1 (128-172)||(26118723-26118767)
chr1 (126-166)||(36688440-36688480)
chr1 (126-166)||(36704540-36704580)
chr1 (92-166)||(36689029-36689103)
chr1 (92-166)||(36705129-36705203)
chr1 (41-93)||(19403101-19403153)
[»] scaffold0091 (1 HSPs)
scaffold0091 (34-93)||(2772-2831)
[»] scaffold0983 (1 HSPs)
scaffold0983 (28-92)||(1932-1996)
[»] scaffold0085 (1 HSPs)
scaffold0085 (126-166)||(8523-8563)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 48648218 - 48648317
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccact 191  Q
    |||||| |||||||  |||| |||| ||||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  48648218 caccaggtgtcaacggattcgttgacaccaaatcttaaccgttgatttctttttatctaaaggcttatatttgttcatttagaatatcatgtgaaccact 48648317  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 30222136 - 30222038
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    |||||| |||||| | |||| |||| ||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||    
T  30222136 caccaggtgtcaatagattcgttgataccaaattttaagcgttgatttcttttaatctgaaggcttatatttgttcatttaaaatatcatgtaaaccac 30222038  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 7724045 - 7723980
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||  |||||||||||    
T  7724045 ccatttattattgatctaatggttgatgatcattctcaccattctcatataagatagtcattctca 7723980  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 51827506 - 51827433
Alignment:
Q  118 accaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccact 191  Q
    ||||||| ||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||| |||||||||    
T  51827506 accaaatcttaaccgttgatttctttttatctaaagacttatatttgttcatttagaatatcatatgaaccact 51827433  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 7725648 - 7725709
Alignment:
Q  32 ttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||||||    
T  7725648 ttatttttgatctaatggttgatgatcattcacaccattctcatataagatagtcattctca 7725709  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 11651335 - 11651412
Alignment:
Q  113 ttgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||||||||||| || ||| ||||||| |||||||||||    
T  11651335 ttgacaccaaatcttaactgttgatttcttttgatctaaaggcttatatttattcattaagaatataatgtgaaccac 11651412  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 41458851 - 41458781
Alignment:
Q  113 ttgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgt 183  Q
    |||| ||||||| |||| ||||||||||||||||||  ||||||||||||| || ||||| ||||||||||    
T  41458851 ttgacaccaaatcttaatcgttgatttcttttgatccaaaggcttatatttattcatttaaaatatcatgt 41458781  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 51469674 - 51469733
Alignment:
Q  34 atttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||||||||| ||||||||| |||||||||||| |||||  | |||||||||    
T  51469674 atttttgatctaatggttcataatcattttcaccattctcacataagataatcattctca 51469733  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 9299762 - 9299827
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    ||||||||||||||||| |||||| ||||| ||||||||  ||||||||||||  | |||||||||    
T  9299762 ccatttatttttgatctgatggttaataattattctcacatttctcatataagatactcattctca 9299827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 6974741 - 6974685
Alignment:
Q  135 gatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccact 191  Q
    ||||||||||||||  ||||||||||||| || ||||| |||||||||| |||||||    
T  6974741 gatttcttttgatccaaaggcttatatttattcatttaaaatatcatgttaaccact 6974685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 9299323 - 9299255
Alignment:
Q  25 cagccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||||||||||| |||||||| ||| |||||||   ||||||||||||  | |||||||||    
T  9299323 cagccatttatttttgatctgatggttgacaattattctcatggttctcatataagaaattcattctca 9299255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 48649211 - 48649155
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatc 148  Q
    |||||| |||||||| |||| |||| ||||||| ||||||||||||||| |||||||    
T  48649211 caccaggtgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatc 48649155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 37538987 - 37539030
Alignment:
Q  35 tttttgatctaatggttgataatcattctcaccattctcatata 78  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||    
T  37538987 tttttaatctaatggttcataatcattctcatcattctcatata 37539030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 2092940 - 2092845
Alignment:
Q  99 tgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccactcaca 195  Q
    |||||||  |||| |||| | ||||| |||| ||||||||| |||| ||||||  | ||||||||| | ||||| | ||||||||||||||||||||    
T  2092940 tgtcaacggattcgttgacatcaaatcttaatcgttgatttttttt-atctgatagattatatttgctcatttaaactatcatgtgaaccactcaca 2092845  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 51826552 - 51826608
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatc 148  Q
    ||||||||||||||  |||| || | ||||||| ||||||||||||||| |||||||    
T  51826552 caccagatgtcaacggattcgttaacaccaaatcttaaccgttgatttcatttgatc 51826608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 9541067 - 9540968
Alignment:
Q  96 agatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccactcaca 195  Q
    |||||||||| ||||| |||| ||||||| ||| |||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  9541067 agatgtcaacgaattcgttgacaccaaatcttagccgttgatatcttttgatccgatggcttatatttgttcatttagaatatcatgtgaaccactcaca 9540968  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 9540346 - 9540439
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtga 185  Q
    |||||| ||||||| ||||| |||| ||||||| |||||| ||||||||| |||||||||||||||||||||| | |||||||| |||||||||    
T  9540346 caccaggtgtcaacgaattcgttgacaccaaatcttaaccattgatttctcttgatctgaaggcttatatttgctcatttagaaaatcatgtga 9540439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 34812047 - 34812124
Alignment:
Q  113 ttgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccact 191  Q
    |||| ||||||| |||| | |||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  34812047 ttgacaccaaatcttaagctttgatttcttttaatctgaaggtttatatttgttcattta-aatatcatgtgaaccact 34812124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 20632947 - 20632854
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtga 185  Q
    |||||| ||| ||| ||| |||||| | ||||| || |||||||||||| |||||||| |||| ||||||||||| | ||| ||||||||||||    
T  20632947 caccaggtgttaacgaatccattgacatcaaatattgaccgttgatttcgtttgatctaaaggtttatatttgttcaattaaaatatcatgtga 20632854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 43992409 - 43992368
Alignment:
Q  24 tcagccatttatttttgatctaatggttgataatcattctca 65  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  43992409 tcagccatttatttttgatctaatggttgatgatcattctca 43992368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 3130189 - 3130253
Alignment:
Q  29 catttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||||||||| |||||| ||  |||||||||||||| |||||| | | |||||||||    
T  3130189 catttatttttgatctaagggttgagaagtattctcaccattcttatataacttactcattctca 3130253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 8541775 - 8541857
Alignment:
Q  101 tcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgt 183  Q
    ||||| ||||| |||| || |||| |||| ||||||||||||||||||  ||  ||||||||| || ||||| ||||||||||    
T  8541775 tcaacgaattcgttgacacaaaatcttaatcgttgatttcttttgatccaaaaacttatatttattcatttaaaatatcatgt 8541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 15602461 - 15602510
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatat 77  Q
    |||| ||||||||||||||||||||| | ||||||||  |||||||||||    
T  15602461 ccatctatttttgatctaatggttgagattcattctcgtcattctcatat 15602510  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 37911603 - 37911546
Alignment:
Q  36 ttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||||||||| | ||||||| | ||||||||||||||  | |||||||||    
T  37911603 ttttgatctaatggttgagattcattcttatcattctcatataagaaattcattctca 37911546  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 20630257 - 20630297
Alignment:
Q  126 ttaaccgttgatttcttttgatctgaaggcttatatttgtt 166  Q
    ||||| ||||||||| |||||||| ||||||||||||||||    
T  20630257 ttaactgttgatttcgtttgatctaaaggcttatatttgtt 20630297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 39738853 - 39738901
Alignment:
Q  45 aatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||| || ||||||||||| ||||||||||  |||||||||||    
T  39738853 aatggttgatgattattctcaccatactcatataagatagtcattctca 39738901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 4379970 - 4380068
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| | ||||| |||||||||||||| |||| ||||||||||||    
T  4379970 caccaaatgtcaacgaattcattgacaccaaatgttaaccgttgatctcttttgatctaagggcttgtatttgtttatttaaaataccatgtgaaccac 4380068  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 24157936 - 24158014
Alignment:
Q  113 ttgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccact 191  Q
    |||| ||||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  24157936 ttgacaccaaatcttaaccgttgatttctttttatctaaaggcttatatttgttcatttagaatatcatgtgaaccact 24158014  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 31328833 - 31328908
Alignment:
Q  108 attcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgt 183  Q
    |||| |||| ||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  31328833 attcgttgacaccaaattttaaacgttgatttcttttaatctgaaggcttatatttgttcatttaaaatatcatgt 31328908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 35318344 - 35318409
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| |||||||  |||||||||||    
T  35318344 ccatttatttttaatctaatggttgatgatcattctcaccattcttatataagatagtcattctca 35318409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 52305887 - 52305821
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctcac 94  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||||||   |||||||||||    
T  52305887 ccatttatttttaatctaatggttgatgatcattctcatcattctcatataagattgtcattctcac 52305821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 48339610 - 48339550
Alignment:
Q  33 tatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||||  |||||||||||    
T  48339610 tatttatgatctaacggttgataatcattctcatcattctcatataagatagtcattctca 48339550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 35317692 - 35317629
Alignment:
Q  30 atttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    ||||||| ||||| ||||||||||| |||||| ||||||||||||||||||  |||||||||||    
T  35317692 atttattattgatttaatggttgatgatcattttcaccattctcatataagatagtcattctca 35317629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 5591041 - 5590971
Alignment:
Q  120 caaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    ||||| ||||| |||||||||||||||||| || |||||||||| || ||| ||||||| |||||||||||    
T  5591041 caaattttaactgttgatttcttttgatctaaatgcttatatttattcattaagaatataatgtgaaccac 5590971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 48127329 - 48127399
Alignment:
Q  120 caaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    ||||| ||||| |||||||||||||||||| || |||||||||| || ||| ||||||| |||||||||||    
T  48127329 caaattttaactgttgatttcttttgatctaaatgcttatatttattcattaagaatataatgtgaaccac 48127399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 25092834 - 25092879
Alignment:
Q  34 atttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||    
T  25092834 atttttgatctaatggttaataatcattctcactattctcatataa 25092879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 50464294 - 50464343
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatat 77  Q
    |||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  50464294 ccatttatttgtaatctaatggttgataattattctcaccattctcatat 50464343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 56459739 - 56459804
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||| |||||| |||||||||   |||||||||||||||||||| | |||||||||||    
T  56459739 ccatttatttttaatctaaaggttgataagtgttctcaccattctcatataattaagtcattctca 56459804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 24158858 - 24158794
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggct 156  Q
    |||||| |||||||| |||| |||| ||||||| ||||||||||||||| |||||||| ||||||    
T  24158858 caccaggtgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatctaaaggct 24158794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 52206479 - 52206408
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctcaccagat 99  Q
    |||||||||||||||| || |||||| ||  ||||||||||||||||||||| | || ||||||||| ||||    
T  52206479 ccatttatttttgatccaagggttgagaagtattctcaccattctcatataactaagccattctcactagat 52206408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 4380714 - 4380648
Alignment:
Q  106 aaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttattta 172  Q
    |||||| |||| ||||||| |||||||||||| ||||||||||| | ||||| |||||||| |||||    
T  4380714 aaattcgttgacaccaaatattaaccgttgatctcttttgatctaagggcttgtatttgttcattta 4380648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 43145985 - 43146055
Alignment:
Q  107 aattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaata 177  Q
    ||||| |||| |||||||||||||||||||| ||||||||||| |  |||||| |||||| ||||| ||||    
T  43145985 aattcgttgacaccaaatgttaaccgttgatctcttttgatctaagagcttatgtttgttcatttaaaata 43146055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 53772822 - 53772902
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttattta 172  Q
    |||||| |||||||  |||| |||| ||||||| |||| ||||||||||||||||||  ||||||| | |||||| |||||    
T  53772822 caccaggtgtcaacggattcgttgacaccaaatattaatcgttgatttcttttgatccaaaggcttttgtttgttcattta 53772902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 17447718 - 17447797
Alignment:
Q  113 ttgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccactc 192  Q
    |||| ||||||| |||||||||||| |||||| |||| | || ||||||||||| ||||| |||| || |||||| ||||    
T  17447718 ttgacaccaaatattaaccgttgatctcttttaatctaagggtttatatttgttcatttaaaataccacgtgaactactc 17447797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 31907684 - 31907727
Alignment:
Q  36 ttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||    
T  31907684 ttttaatctaagggttgataatcattctcaccattctcacataa 31907727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 39819451 - 39819417
Alignment:
Q  59 attctcaccattctcatataagtgagtcattctca 93  Q
    ||||||||||||||||||||||| |||||||||||    
T  39819451 attctcaccattctcatataagttagtcattctca 39819417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 30610254 - 30610291
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctca 65  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  30610254 ccatctatttttgatctaatggtggataatcattctca 30610291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 48339767 - 48339832
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||| ||||| |||||||||||||||| |||||||| | ||||||||| | ||  |||||||||||    
T  48339767 ccatctatttatgatctaatggttgatgatcattctaaacattctcatgtgagatagtcattctca 48339832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 49999553 - 49999630
Alignment:
Q  16 ttttgatatcagccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||| |||| |||||| ||||||| ||||||||||  ||||||||||| | |||||||| ||||   |||||||||||    
T  49999553 ttttaatataagccatctatttttaatctaatggtccataatcattctgatcattctcacataaaatagtcattctca 49999630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 33960532 - 33960568
Alignment:
Q  29 catttatttttgatctaatggttgataatcattctca 65  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  33960532 catttaattttgatctgatggttgataatcattctca 33960568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 56459042 - 56458990
Alignment:
Q  41 atctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||| |||||||||   |||||||||||||||||||| | |||||||||||    
T  56459042 atctaaaggttgataagtgttctcaccattctcatataattaagtcattctca 56458990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 289
Target Start/End: Original strand, 13255062 - 13255228
Alignment:
Q  121 aaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaacca--ctcacattattatccttctatcgtttgct 218  Q
    |||| |||||||||||||||||||||||||||| |||||||||| | ||||| || ||||| |||||||  ||||||| |||||  |  | || ||| ||    
T  13255062 aaattttaaccgttgatttcttttgatctgaagacttatatttgctcatttaaaaaatcatctgaaccattctcacatgattatggtcttgtcattttct 13255161  T
Q  219 -tctcttctcaaaatatgaaggtagtgctcctatgccttttttatccatgaatgccatgaatatatgcaatt 289  Q
     ||||||||||||||| |||| |||||     |||||||| |||||||||||||||||||||||||||||||    
T  13255162 gtctcttctcaaaatacgaagatagtg-----atgcctttcttatccatgaatgccatgaatatatgcaatt 13255228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 279
Target Start/End: Complemental strand, 10927239 - 10927068
Alignment:
Q  111 cattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaacca--ctcacattattatccttct 208  Q
    |||||| ||||||| ||||| ||||||||||||||||| ||||||| ||||||| | ||||| ||| ||||||||||||  |||||| ||||||   |||    
T  10927239 cattgacaccaaatcttaactgttgatttcttttgatccgaaggctaatatttgctcatttaaaatctcatgtgaaccactctcacaatattatggctct 10927140  T
Q  209 atcgtttgct-tctcttctcaaaatatgaaggtagtgctcctatgccttttttatccatgaatgccatgaat 279  Q
    ||| |||  | |||||||| |||||| |||||||| |||  | |||||||  |||||||||| |||||||||    
T  10927139 atcattttatgtctcttcttaaaatacgaaggtagagcttatgtgcctttcatatccatgaacgccatgaat 10927068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 10926177 - 10926256
Alignment:
Q  113 ttgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccactc 192  Q
    |||| |||||||  ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  10926177 ttgacaccaaattataaccgttgattttttttgatctgaagacttatatttgttcatttagaatatcatgtgaactactc 10926256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 33435370 - 33435453
Alignment:
Q  108 attcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccact 191  Q
    |||| |||| ||||||| ||||| ||||||||||||| |||| ||||||||||||| || ||||||||||||||||||||||||    
T  33435370 attcgttgacaccaaatcttaactgttgatttctttttatctaaaggcttatatttattcatttagaatatcatgtgaaccact 33435453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 20833317 - 20833385
Alignment:
Q  99 tgtcaacaaattcattgaaaccaaatg-ttaaccgttgatttcttttgatctgaaggcttatatttgtt 166  Q
    ||||||| ||||| |||| |||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  20833317 tgtcaacgaattcgttgacaccaaattattaaccgttgatttcgtttgatctgaaggcttatatttgtt 20833385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 20834004 - 20833930
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtt 166  Q
    |||||| ||| ||| ||| | |||| ||||||| || |||||||||||| |||||||| |||| |||||||||||    
T  20834004 caccaggtgttaacgaatccgttgacaccaaatattgaccgttgatttcgtttgatctaaaggtttatatttgtt 20833930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 1825514 - 1825551
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctca 65  Q
    |||||||||||  |||||||||||||||||||||||||    
T  1825514 ccatttattttgaatctaatggttgataatcattctca 1825551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 33436311 - 33436255
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatc 148  Q
    ||||||||||||||  |||| |||| ||||||| |||| |||||||||| |||||||    
T  33436311 caccagatgtcaacggattcgttgacaccaaatcttaatcgttgatttcatttgatc 33436255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 31954324 - 31954233
Alignment:
Q  99 tgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    |||||||  |||| |||| ||||||| ||||||||||||||||||| || | |||||||| ||||||| |||||||||||||||||||||||    
T  31954324 tgtcaacggattcgttgacaccaaatcttaaccgttgatttctttttatttaaaggcttacatttgttgatttagaatatcatgtgaaccac 31954233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 11698138 - 11698204
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctcac 94  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||||   ||||||||||||    
T  11698138 ccatttatttttgatctaatgattgatgatcattctcaacattctcatataaaatagtcattctcac 11698204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 31955226 - 31955157
Alignment:
Q  121 aaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    |||| ||||| |||||||||||||||||| || |||||||||| || ||| ||||||| |||||||||||    
T  31955226 aaatcttaactgttgatttcttttgatctaaaagcttatatttattcattaagaatataatgtgaaccac 31955157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 47361206 - 47361271
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||| ||||||||||||||| |||||| |||||||||  |||| |||||||||| |||||||||||    
T  47361206 ccatctatttttgatctaatagttgatgatcattctcgtcattttcatataagttagtcattctca 47361271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 4181037 - 4181094
Alignment:
Q  36 ttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||   ||||||||||    
T  4181037 ttttaatcaaatggttgataattattctcaccattctcatataagattgtcattctca 4181094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 47362120 - 47362055
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||| ||||||||||||||| |||||| |||||||||  |||| |||||||||| |||| ||||||    
T  47362120 ccatctatttttgatctaatagttgatgatcattctcgtcattttcatataagttagtcgttctca 47362055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 3233391 - 3233442
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    ||||||||||| |||||||||||| | ||  |||||||||||||||||||||    
T  3233391 ccatttattttagatctaatggttaagaagtattctcaccattctcatataa 3233442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 7562044 - 7562088
Alignment:
Q  35 tttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    |||||||||||| |||| ||||| ||||||| |||||||||||||    
T  7562044 tttttgatctaaaggttcataattattctcatcattctcatataa 7562088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 47362757 - 47362793
Alignment:
Q  29 catttatttttgatctaatggttgataatcattctca 65  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  47362757 catttatttttgatctagtggttgatgatcattctca 47362793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 42104479 - 42104428
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42104479 ccatttatttttgatctaatggttgataatcattctcatcattctcatataa 42104428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 42104511 - 42104577
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctcac 94  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||   ||||||||||||    
T  42104511 ccatttatttttgatctaatagttgataatcattctcatcattctcatataaagtagtcattctcac 42104577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 531492 - 531422
Alignment:
Q  113 ttgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgt 183  Q
    |||| ||||||| |||| ||| ||||||||||||||  ||||||||||||| || ||||| ||||||||||    
T  531492 ttgacaccaaatcttaatcgtggatttcttttgatccaaaggcttatatttattcatttaaaatatcatgt 531422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 8742096 - 8742050
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctca 74  Q
    ||||||||||||||||| || |||||||| |||||||||||||||||    
T  8742096 ccatttatttttgatcttattgttgataagcattctcaccattctca 8742050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 35751610 - 35751687
Alignment:
Q  16 ttttgatatcagccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||| |||| |||||| ||||||| ||||||| ||  ||||||||||||| |||||||||||||   |||||||||||    
T  35751610 ttttaatataagccatctatttttaatctaatagtccataatcattctcatcattctcatataaaatagtcattctca 35751687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 5664264 - 5664315
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    |||||||||||| |||||| |||||||||   ||||||||||||||||||||    
T  5664264 ccatttatttttcatctaaaggttgataagtgttctcaccattctcatataa 5664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 29703475 - 29703546
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctcaccagat 99  Q
    ||||| ||||||||||||| |||||||||   ||||||||||||||| |||| | | |||||||||| ||||    
T  29703475 ccattaatttttgatctaaaggttgataagtgttctcaccattctcacataattaactcattctcactagat 29703546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 1283402 - 1283344
Alignment:
Q  35 tttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    ||||| |||||||| |||||||| ||||||| |||||||||||||   |||||||||||    
T  1283402 ttttttatctaatgattgataattattctcatcattctcatataaaatagtcattctca 1283344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 10776810 - 10776860
Alignment:
Q  29 catttatttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    |||||||||| |||||||||||| | ||| ||||||||||||||| |||||    
T  10776810 catttattttagatctaatggttaagaattattctcaccattctcgtataa 10776860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 31042777 - 31042737
Alignment:
Q  59 attctcaccattctcatataagtgagtcattctcaccagat 99  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  31042777 attctcaccattctcatataactaagtcattctcactagat 31042737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 34190811 - 34190759
Alignment:
Q  41 atctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||||| || ||||||| ||||||||||||||  | |||||||||    
T  34190811 atctaatggttgattattattctcatcattctcatataagatattcattctca 34190759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 31036153 - 31036082
Alignment:
Q  120 caaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccact 191  Q
    ||||| |||| ||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||    
T  31036153 caaatcttaatcgttgatttcttttgatataaaggcttatatttgttgatttagaatatgatgtgaaccact 31036082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 22799797 - 22799699
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    |||||| ||||||  ||||| |||| ||||||| ||||| |||||||||||||||||| ||| ||||||||| || ||| ||||||| |||||||||||    
T  22799797 caccaggtgtcaatgaattcgttgacaccaaatcttaactgttgatttcttttgatctaaagacttatatttattcattaagaatataatgtgaaccac 22799699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 41045419 - 41045496
Alignment:
Q  113 ttgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||||||||||| || ||| ||||||| |||||||||||    
T  41045419 ttgacaccaaatcttaactgttgatttcttttgatctaaaggcttatatttattcattaagaatataatgtgaaccac 41045496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 31082787 - 31082683
Alignment:
Q  86 cattctcaccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtga 185  Q
    ||||| |||||  ||||||  ||||| |||| ||||||| |||||  ||||||||||||||||| | ||||||||||| || ||| ||||||| ||||||    
T  31082787 cattcacaccaagtgtcaatgaattcgttgacaccaaatcttaactattgatttcttttgatctaagggcttatatttattcattaagaatataatgtga 31082688  T
Q  186 accac 190  Q
    |||||    
T  31082687 accac 31082683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 24252320 - 24252389
Alignment:
Q  24 tcagccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    ||||||||| | |||| ||| ||||||||||||||||| |||||||||| |||||||  |||||||||||    
T  24252320 tcagccattaacttttaatcaaatggttgataatcattttcaccattcttatataagatagtcattctca 24252389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 30667427 - 30667472
Alignment:
Q  34 atttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||    
T  30667427 atttttgatctaatggttaataaacattctcaccattctcatataa 30667472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 34064866 - 34064931
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||| |||||| |||||||||   |||||||||||||||||||| | |||||||||||    
T  34064866 ccatttatttttaatctaaaggttgataagtgttctcaccattctcatataattaagtcattctca 34064931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 14394731 - 14394667
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctc 92  Q
    |||| ||||||| |||||||| |||||||| ||| ||||||||||||||||||  ||||||||||    
T  14394731 ccatctattttttatctaatgattgataattattatcaccattctcatataagatagtcattctc 14394667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 19366603 - 19366505
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    |||||| ||||||  ||||| |||| |  |||| ||||| | |||||||||||||||| ||||||||| ||| || ||| ||||||| |||||||||||    
T  19366603 caccaggtgtcaatgaattcgttgacattaaatcttaactgctgatttcttttgatctaaaggcttatgtttattcattaagaatataatgtgaaccac 19366505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 29088655 - 29088538
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaac--ca 189  Q
    |||| ||||||| | ||||| |||| ||  |||||||||||||||| ||||||||||| |  |||||| |||||| ||||| |||| || ||||||  |     
T  29088655 cacctgatgtcagcgaattcgttgacacttaatgttaaccgttgatctcttttgatctaagagcttatgtttgttcatttaaaataccaagtgaactgct 29088556  T
Q  190 ctcacattattatccttc 207  Q
    ||||||| ||||||||||    
T  29088555 ctcacatgattatccttc 29088538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 7120890 - 7120955
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||| |||||||||| | ||||||||| ||||||||||||||| ||||||||   |||||||||||    
T  7120890 ccatctatttttgatatgatggttgatgatcattctcaccattttcatataaaatagtcattctca 7120955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 19360513 - 19360456
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatct 149  Q
    |||||| ||||||| ||||| |||| ||||||| ||||||||||||||| ||||||||    
T  19360513 caccaggtgtcaacgaattcgttgacaccaaatattaaccgttgatttcgtttgatct 19360456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 39998628 - 39998596
Alignment:
Q  41 atctaatggttgataatcattctcaccattctc 73  Q
    |||||||||||||||||||||||||||||||||    
T  39998628 atctaatggttgataatcattctcaccattctc 39998596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 19359718 - 19359780
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaagg 154  Q
    |||||| |||||||  |||| |||| ||||||| ||||||||||||||| |||||||| ||||    
T  19359718 caccaggtgtcaacggattcgttgacaccaaatattaaccgttgatttcgtttgatctaaagg 19359780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 34064166 - 34064114
Alignment:
Q  41 atctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||| |||||||||   |||||||||||||||||||| | |||||||||||    
T  34064166 atctaaaggttgataagtgttctcaccattctcatataattaagtcattctca 34064114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 36423246 - 36423198
Alignment:
Q  31 tttatttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    ||||||||| |||| ||| |||||||| ||||||| |||||||||||||    
T  36423246 tttatttttaatctgatgattgataattattctcatcattctcatataa 36423198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 25672055 - 25671964
Alignment:
Q  99 tgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    |||||| | |||| |||| || |||| |||| |||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||    
T  25672055 tgtcaatagattcgttgacactaaatcttaagcgttgatttcttttcatctgaaggcttatatttattcatttaaaatatcatgtgaaccac 25671964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 50271806 - 50271723
Alignment:
Q  107 aattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    ||||| |||| ||||||| ||||| |||||||||||||||||| ||||||||||||| || ||| ||||||| |||||||||||    
T  50271806 aattcgttgacaccaaatcttaactgttgatttcttttgatctaaaggcttatatttattcattaagaatataatgtgaaccac 50271723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 26779710 - 26779765
Alignment:
Q  24 tcagccatttatttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    ||||||||  |||||||||||||||||| |||||||||||||||||||||| ||||    
T  26779710 tcagccatccatttttgatctaatggttcataatcattctcaccattctcacataa 26779765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 19402404 - 19402339
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||| |||||| |||||||||   |||||||||||||||||||| | |||||||||||    
T  19402404 ccatttatttttaatctaaaggttgataagtgttctcaccattctcatataattaagtcattctca 19402339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 40022171 - 40022262
Alignment:
Q  99 tgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtttatttagaatatcatgtgaaccac 190  Q
    ||||||| ||||| |||| ||| ||||||| |||||||| ||||||||||| |  |||| |||||||| ||||| |||| || |||||||||    
T  40022171 tgtcaacgaattcgttgacacctaatgttacccgttgatctcttttgatctaagagcttgtatttgttcatttaaaataccacgtgaaccac 40022262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 50804029 - 50804079
Alignment:
Q  29 catttatttttgatctaatggttgataatcattctcaccattctcatataa 79  Q
    |||||||||||||||  ||||||||||| |||||||| |||||||||||||    
T  50804029 catttatttttgatcatatggttgataagcattctcatcattctcatataa 50804079  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 26118723 - 26118767
Alignment:
Q  128 aaccgttgatttcttttgatctgaaggcttatatttgtttattta 172  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||    
T  26118723 aaccgttgatttcttttgatctaaaggcttttatttgttcattta 26118767  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 36688440 - 36688480
Alignment:
Q  126 ttaaccgttgatttcttttgatctgaaggcttatatttgtt 166  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  36688440 ttaaccgttgatttcgtttcatctgaaggcttatatttgtt 36688480  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 36704540 - 36704580
Alignment:
Q  126 ttaaccgttgatttcttttgatctgaaggcttatatttgtt 166  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  36704540 ttaaccgttgatttcgtttcatctgaaggcttatatttgtt 36704580  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 36689103 - 36689029
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtt 166  Q
    |||||| ||| ||| ||| | |||| || |||| ||||||||||||||| |||||||| |||| |||||||||||    
T  36689103 caccaggtgttaacgaatccgttgacacaaaatattaaccgttgatttcgtttgatctaaaggtttatatttgtt 36689029  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 36705203 - 36705129
Alignment:
Q  92 caccagatgtcaacaaattcattgaaaccaaatgttaaccgttgatttcttttgatctgaaggcttatatttgtt 166  Q
    |||||| ||| ||| ||| | |||| || |||| ||||||||||||||| |||||||| |||| |||||||||||    
T  36705203 caccaggtgttaacgaatccgttgacacaaaatattaaccgttgatttcgtttgatctaaaggtttatatttgtt 36705129  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 19403101 - 19403153
Alignment:
Q  41 atctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||| |||||||||   |||||||||||||||||||| | |||||||||||    
T  19403101 atctaaaggttgataagtgttctcaccattctcatataattaagtcattctca 19403153  T

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Target: scaffold0091 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 2831 - 2772
Alignment:
Q  34 atttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctca 93  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||  | |||||||||    
T  2831 atttttgatctaatggttcataatcattctcaccattctcacataagataatcattctca 2772  T

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Target: scaffold0983 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 1932 - 1996
Alignment:
Q  28 ccatttatttttgatctaatggttgataatcattctcaccattctcatataagtgagtcattctc 92  Q
    |||||||||||| || ||||||||||| |||||| ||||||||||||||||| | | ||||||||    
T  1932 ccatttatttttaatttaatggttgatgatcattatcaccattctcatataaattattcattctc 1996  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 8523 - 8563
Alignment:
Q  126 ttaaccgttgatttcttttgatctgaaggcttatatttgtt 166  Q
    ||||| ||||||||| |||||||| ||||||||||||||||    
T  8523 ttaactgttgatttcgtttgatctaaaggcttatatttgtt 8563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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