View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_43 (Length: 275)
Name: NF1504_1D_low_43
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 32560828 - 32561102
Alignment:
| Q |
1 |
gatgataaaggtaattcatttcagaattatgtgccttatgttgctgttcacatgagagtagaaattgattggatgattcattgcaaaaaattggagcaaa |
100 |
Q |
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| T |
32560828 |
gatgataaaggtaattcatttcagaattatgtgccttatgttgctgttcacatgagagtagaaattgattggacgattcattgcaaaaaattggagcaaa |
32560927 |
T |
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| Q |
101 |
gattgaacacaaatcagatatgtagtagcaagaatgagataatggaaagagtagggaacattgaaggtcttaacaagaatcaagttgttctttatcttgc |
200 |
Q |
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| T |
32560928 |
gattgaacacaaatcagatatgtagtagcaagaatgagataatggaaagagtagggaacattgaaggtcttaacaagaatcaagttgttctttatcttgc |
32561027 |
T |
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| Q |
201 |
agtagctgataaactacttcaaaattcttcaatattggaaggttggaaagaagggtttctaccttatgagaagaa |
275 |
Q |
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| T |
32561028 |
agtagctgataaactacttcaaaattcttcaatattggaaggttggaaggaagggtttctaccttttgagaagaa |
32561102 |
T |
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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 10751414 - 10751529
Alignment:
| Q |
37 |
tatgttgctgttcacatgagagtagaaattgattggatgattcattgcaaaaaattggagcaaagattgaacacaaatcagatatgtagtagcaagaatg |
136 |
Q |
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| T |
10751414 |
tatgttgctgttcatatgaggatagaaattgattggatgattcattgcaaaaagttagagcagagattgaacacaaatcagatatgcagtagcaagaaag |
10751513 |
T |
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| Q |
137 |
agataatggaaagagt |
152 |
Q |
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| T |
10751514 |
agatagtggaaagagt |
10751529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 10751571 - 10751645
Alignment:
| Q |
191 |
tttatcttgcagtagctgataaactacttcaaaattcttcaatattggaaggttggaaagaagggtttctacctt |
265 |
Q |
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| T |
10751571 |
tttatcttgcagtagccgataaactccttaacaattcttccataatggaagactggggagaagggtttcttcctt |
10751645 |
T |
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