View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_44 (Length: 274)
Name: NF1504_1D_low_44
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 32560614 - 32560859
Alignment:
| Q |
22 |
agttcaaagggatttggatcagttgagacagtataaaaatggttcttttgatgatatcgaggtgattaagattgatgggaaaaaccctttcttgtggcat |
121 |
Q |
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| T |
32560614 |
agttcaaagggatttggatcagttgagacagtataaaaatggttcttttgatgatattgaggtgattaagattgatgggaaaaaccctttcttgtggcat |
32560713 |
T |
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| Q |
122 |
gatcattggcctgttaaggactatgcaaaggtttttgagtgcttagtcctggttgatgaatttactcaagaagctgatagagttgcctctatgattagaa |
221 |
Q |
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| T |
32560714 |
gatcattggcctgttaaggactatgcaaaggtttttgagtgcttagtcctggttgatgaatttactcaagaagctgatagagttgcctctatgattagaa |
32560813 |
T |
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| Q |
222 |
aagttggtagccatgatgataaaggtaattcatttcagtattatgt |
267 |
Q |
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| T |
32560814 |
aagttggtagccatgatgataaaggtaattcatttcagaattatgt |
32560859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 10751111 - 10751178
Alignment:
| Q |
98 |
gggaaaaaccctttcttgtggcatgatcattggcctgttaaggactatgcaaaggtttttgagtgctt |
165 |
Q |
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| T |
10751111 |
gggaaaaaccctttcttatggcatgatcattggcctttgaaaaactatggaaaggtttttgagtgctt |
10751178 |
T |
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