View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_45 (Length: 274)
Name: NF1504_1D_low_45
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 28721071 - 28720829
Alignment:
| Q |
17 |
atatctagaactcaaaaggttaatactagtagtagtcgatcctagggtattataactttgccataagtttcaacaataacctgcaagttgatactaaaag |
116 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
28721071 |
atatctataactcaaa-ggttaatactagtagtagtcgatcctagggtattataactttgccataagtttcaacaataacctggacgttgatactaaaag |
28720973 |
T |
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| Q |
117 |
caaaccttttgacttcttcctttgaaacacctaccaaagcagaaaccttttgatctatgtgagcatgtctatagttaaggtaaacattccaatagagcag |
216 |
Q |
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| T |
28720972 |
caaaccttttgacttcttcctttgaaacacctatcaaagcagaaaccttttgatctatgtgagcatgtctatagttaaggtaaacattccaatagagcag |
28720873 |
T |
|
| Q |
217 |
agcaaccaggtcaagttaatttgagaataaaactgaacaccaaa |
260 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28720872 |
agcaaccaggtcaaattaatttgagaataaaactgaacaccaaa |
28720829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 4244907 - 4244839
Alignment:
| Q |
103 |
gttgatactaaaagcaaaccttttgacttcttcctttgaaacacctaccaaagcagaaaccttttgatc |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
4244907 |
gttgatactaaaagcaaaccttttgacttcttcctttgaaacacccatcaaagcagaaaccttttgatc |
4244839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 4245366 - 4245323
Alignment:
| Q |
17 |
atatctagaactcaaaaggttaatactagtagtagtcgatcctag |
61 |
Q |
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| T |
4245366 |
atatctagaactcaaa-ggttaatactagtagtagtcgatcctag |
4245323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 38053851 - 38053792
Alignment:
| Q |
184 |
tctatagttaaggtaaacattccaatagagcagagcaaccaggtcaagttaatttgagaa |
243 |
Q |
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||||||| ||||| |||| ||| ||||||||||||||| ||||||||||||||| ||||| |
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| T |
38053851 |
tctatagctaaggcaaactttctaatagagcagagcaaacaggtcaagttaattcgagaa |
38053792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 30253858 - 30254102
Alignment:
| Q |
17 |
atatctagaactcaaaaggttaatactagtagtagtcgatcctagggtattataactttgccataagtttcaacaataacctgcaagttgatactaaaag |
116 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
30253858 |
atatctagaactcaaa-ggttactac--gtagtagtcgatcctagggtattataactttgccataagtttcaacaataacctggatgttgatactaaaag |
30253954 |
T |
|
| Q |
117 |
caaaccttttgacttcttcctttgaaacacctac----caaagcagaaaccttttgatctatgtgagcatgtctatagttaaggtaaacattccaataga |
212 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
30253955 |
caaaccttttgacttcttcctttgaaacacctatatatcaaagcatagtccttttgatctatgtgagcacgtatatagttaaggtaaacattccaataga |
30254054 |
T |
|
| Q |
213 |
gcagagcaaccaggtcaagttaatttgagaataaaactgaacaccaaa |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30254055 |
gcagagcaaccaggtcaagttaatttgagaataaaactaaacaccaaa |
30254102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 11237735 - 11237664
Alignment:
| Q |
185 |
ctatagttaaggtaaacattccaatagagcagagcaaccaggtcaagttaatttgagaataaaactgaacac |
256 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11237735 |
ctatagttaaggtaaacattctaatagagtagagcaaccaggtcaagttaatttgagaataaaactgaacac |
11237664 |
T |
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