View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_46 (Length: 271)
Name: NF1504_1D_low_46
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 53961151 - 53961328
Alignment:
| Q |
12 |
atgaatgaaaggcagctaagtatcattatgattaagcatttttcattagaataacaaatgcttgattagcaggcatacttgttaaataatgacgataaat |
111 |
Q |
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| T |
53961151 |
atgaatgaaaggcagctaagtatcattatgattaagcatttttcattagaataacaaatgcttgattagcaggcatacttgttaaataatgacgataaat |
53961250 |
T |
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| Q |
112 |
attagcttttcatcatctagaaaagagcgtgtaaagataattgagtatttctatgtcatattgtacatattctaaaat |
189 |
Q |
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| T |
53961251 |
attagcttttcatcatctagaaaagagcgtgtaaagataattgagtatttttatgtcatagtgtacatattctaaaat |
53961328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 53961503 - 53961587
Alignment:
| Q |
181 |
ttctaaaatatagatattggatacaagactagtggggtttttgcttgaaggcgtgcgtgctcattacgttcatgtacaagccagc |
265 |
Q |
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| T |
53961503 |
ttctaaaatatagatattggatacaagactagtggggtttttgcttgaaggcgtgcgtgctcattacgttcatgtacaagccagc |
53961587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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