View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504_1D_low_47 (Length: 269)
Name: NF1504_1D_low_47
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_47 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 40455317 - 40455068
Alignment:
| Q |
12 |
atgaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcacaagttatctcggtcatatgcatcttttttatctcaattatc |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40455317 |
atgaaccagacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcacaagttatctcggtcatatgcatcttttgtatctcaattatc |
40455218 |
T |
|
| Q |
112 |
ctcgatttctattcctagtaatgtacataaagctttggcagatcctaactggactgctgcattggttgaggagatgacaacttnnnnnnnnnnnnnnnnn |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
40455217 |
ctcgatttctattcctagtaatgtacatgaagctttagcagatcctaactggactgctgcaatggttgaggagatgacagctttaaaaaaaaaaa----- |
40455123 |
T |
|
| Q |
212 |
nncaacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgcagat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40455122 |
---aacacttgggatcttgtaactttaccaagagggaagaaaacggtggggtgcagat |
40455068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 32202331 - 32202579
Alignment:
| Q |
12 |
atgaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcacaagttatctcggtcatatgcatcttttttatctcaattatc |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32202331 |
atgaaccagacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcacaagttatctcggtcatatgcatcttttgtatctcaattatc |
32202430 |
T |
|
| Q |
112 |
ctcgatttctattcctagtaatgtacataaagctttggcagatcctaactggactgctgcattggttgaggagatgacaacttnnnnnnnnnnnnnnnnn |
211 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
32202431 |
ctcgatttctattcctagtaatgtatatgaagctttagcagatcctaactgaactgctgcaatggttgaggagatgacaactt---------taaaaaaa |
32202521 |
T |
|
| Q |
212 |
nncaacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgcagat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32202522 |
aacaacacttgggatcttgtaactttaccaagagggaagaaaacggtggggtgcagat |
32202579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 56391363 - 56391185
Alignment:
| Q |
12 |
atgaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcacaagttatctcggtcatatgcatcttttttatctcaattatc |
111 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
56391363 |
atgaaccagaccctcaatccaaagctaaatatcccattagtaattatgtgtcaactcacaagttatctcggtcatatgcatcatttgtatctcaattatc |
56391264 |
T |
|
| Q |
112 |
ctcgatttctattcctagtaatgtacataaagctttggcagatcctaactggactgctgcattggttgaggagatgaca |
190 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||| ||||| | ||| ||| ||||||||||||| |
|
|
| T |
56391263 |
ctcaatttctattcctagtaatgtacaggaagctttggcagatcctagatggaccgaagcaatggctgaggagatgaca |
56391185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 56391170 - 56391118
Alignment:
| Q |
214 |
caacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgca |
266 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| | || ||||||| |
|
|
| T |
56391170 |
caacacttgggatcttgtgactttaccaagtgggaagaaaccagtggggtgca |
56391118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 27515604 - 27515458
Alignment:
| Q |
12 |
atgaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcacaagttatctcggtcatatgcatcttttttatctcaattatc |
111 |
Q |
| |
|
|||||||| ||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
27515604 |
atgaaccagaccctcaatcaaaagctaaatatcccattagtaattatgtgtcaactcacaagttatctcggtcatatgcatcatttgtatctcaattatc |
27515505 |
T |
|
| Q |
112 |
ctcgatttctattcctagtaatgtacataaagctttggcagatccta |
158 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27515504 |
ctcaatttctattcctagtaatgtacaggaagctttggcagatccta |
27515458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 27515413 - 27515361
Alignment:
| Q |
214 |
caacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgca |
266 |
Q |
| |
|
||||||||||||| |||| ||||||||||| ||||||||| | || ||||||| |
|
|
| T |
27515413 |
caacacttgggatattgtgactttaccaagtgggaagaaaccagtggggtgca |
27515361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 39744096 - 39744274
Alignment:
| Q |
12 |
atgaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcacaagttatctcggtcatatgcatcttttttatctcaattatc |
111 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
39744096 |
atgaaccagaccctcaatccaaagctaaatacctcattagtaattatgtgtcaactcacaagttatctcagtcatatgcatcatttgtatctcaattatc |
39744195 |
T |
|
| Q |
112 |
ctcgatttctattcctagtaatgtacataaagctttggcagatcctaactggactgctgcattggttgaggagatgaca |
190 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||| ||||| | ||| ||| ||||||||||||| |
|
|
| T |
39744196 |
ctcaatttctattcctagtaatgtacaggaagctttggcagatcctagatggaccgaagcaatggctgaggagatgaca |
39744274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 39744289 - 39744341
Alignment:
| Q |
214 |
caacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgca |
266 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| | || ||||||| |
|
|
| T |
39744289 |
caacacttgggatcttgtgactttaccaagtgggaagaaaccagtggggtgca |
39744341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University