View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_5 (Length: 487)
Name: NF1504_1D_low_5
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Complemental strand, 35013150 - 35012690
Alignment:
| Q |
7 |
gatatgtagtaagaatcatattctatttcaagatgaggagagcctacacatttcatacaaactac--tctccattctatatatatctttggtggtttaag |
104 |
Q |
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| T |
35013150 |
gatatgtagtaagaatcatattctatttcaagatgaggagagcgtacacatttcatacaaactacgatctccattctatatatat--ttggtggtttaag |
35013053 |
T |
|
| Q |
105 |
atttttgtacaaagggtattgttgaaacacaaatgtaaattattaaatattgaatttctagtaaactcattgttttggaacaaaaatatagtaagttacc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
35013052 |
atttttgtacaaagggtattgttgaaacacaaatgtaaattattaaatattgaaattctagtaaactcattgttttggaacgaaa-tataataagttacc |
35012954 |
T |
|
| Q |
205 |
aaactaccaaatatttagaatttatttagggagtaattcagccaatgtttcaacttaatgcatgcatgtgatctacgaacgaaagcaactactgttgctg |
304 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
35012953 |
aaactaccaaatatttagaatttatt----gagtaattcagccaatgtttcaacttaatgcatg----tgatccacgaacgaaagcaactactgttgctg |
35012862 |
T |
|
| Q |
305 |
catttgagttgagttaacggtctctctagtctataatgaaaaatggttcgctagtaatttattaggacaacaaaaattgggtggtagacaaggtaagtgt |
404 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35012861 |
catttgagttgagttaacggtctctatagtctataatgaaaaatggttcgctagtaatttattaggacaacaaaaattgggtggtagacaaggtaagtgt |
35012762 |
T |
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| Q |
405 |
ttaaaaatcagagtaggtgcaaatgaaaattgtaatttatacatgtgatcaatgtcttgttcgtagtttcat |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35012761 |
ttaaaaatcagagtaggtgcaaatgaaaattgtaatttatacatgtgatcaatgtcttgttcgtagtttcat |
35012690 |
T |
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