View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504_1D_low_51 (Length: 266)
Name: NF1504_1D_low_51
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_51 |
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| [»] chr6 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 24495291 - 24495053
Alignment:
| Q |
28 |
taatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495291 |
taatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctg |
24495192 |
T |
|
| Q |
128 |
taaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgatgatcttgatgacgttgcctagacagaggtttggtgaggca |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24495191 |
taaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcctagacagaggtttggtgaggca |
24495092 |
T |
|
| Q |
228 |
atctgctaactgatctttagtggaaacatgttgaacccg |
266 |
Q |
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||||| || |||||| |||||||||||||||||||||| |
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| T |
24495091 |
atctgatagatgatctatagtggaaacatgttgaacccg |
24495053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 24491733 - 24491623
Alignment:
| Q |
28 |
taatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491733 |
taatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctg |
24491634 |
T |
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| Q |
128 |
taaccttaaca |
138 |
Q |
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||||||||||| |
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| T |
24491633 |
taaccttaaca |
24491623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 2810289 - 2810226
Alignment:
| Q |
28 |
taatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaata |
91 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
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| T |
2810289 |
taatcaattacagtgtgatattatttcttaatcacagaataactctcgtctaaaatgcttaata |
2810226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 2810071 - 2810031
Alignment:
| Q |
99 |
tatctcttaatttaaaagccttggtcctgtaaccttaacac |
139 |
Q |
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| T |
2810071 |
tatctcttaatttaaaagccttggtcttgtaaccttaacac |
2810031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 18556705 - 18556939
Alignment:
| Q |
31 |
tcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaa |
130 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
18556705 |
tcaattatagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatactagaa-tatctcttaatttaaaagccttggtcctgtaa |
18556803 |
T |
|
| Q |
131 |
ccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgatgatcttgatgacgttgcctagacagaggtttggtgaggcaatc |
230 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556804 |
ccttaacacgcccccgcaagataggggtaccgtcatatacgcctatcttgaaacgaagatcttgatgacgttgcctagacagaggtttggtgaggcaatc |
18556903 |
T |
|
| Q |
231 |
tgctaactgatctttagtggaaacatgttgaacccg |
266 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
18556904 |
tgctagctgatctttagtggaaacatgttgaacccg |
18556939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 107 - 266
Target Start/End: Complemental strand, 86677 - 86518
Alignment:
| Q |
107 |
aatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgatgatcttgatgacgttgcct |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
86677 |
aatttaaaagccttggtcctgtaaccttaacacgcccctgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcct |
86578 |
T |
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| Q |
207 |
agacagaggtttggtgaggcaatctgctaactgatctttagtggaaacatgttgaacccg |
266 |
Q |
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|||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| |
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| T |
86577 |
agacagaggtttggtgaggcaatctgttagctgatctgtagtggaaacatgttgaacccg |
86518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 86792 - 86693
Alignment:
| Q |
28 |
taatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataata----ctagtatctcttaatttaaaagccttggt |
123 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||||||||||||| |
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| T |
86792 |
taatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatactagaatataatatcacttaatttaaaagccttggt |
86693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 24359046 - 24358936
Alignment:
| Q |
28 |
taatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctg |
127 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24359046 |
taatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctg |
24358947 |
T |
|
| Q |
128 |
taaccttaaca |
138 |
Q |
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||||||||||| |
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| T |
24358946 |
taaccttaaca |
24358936 |
T |
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