View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_52 (Length: 260)
Name: NF1504_1D_low_52
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 101 - 254
Target Start/End: Complemental strand, 6232467 - 6232313
Alignment:
| Q |
101 |
actgctgataaccacagccaacctgcacccaaaccaaaactaaacccctgaaccggcagctataacagaagaacagcaa-aaacagaaaaccggcatagc |
199 |
Q |
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| T |
6232467 |
actgctgataaccacagccaacctgcacccaaaccaaaactaaacccctgaaccggcagctataccagaaaaaccgcaacaaacagaaaactggcatagc |
6232368 |
T |
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| Q |
200 |
agaaaacaaaagcccaaaaggtgcagcagaactacagcaacctcaacagacaaaa |
254 |
Q |
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| T |
6232367 |
agaaaacaaaagcccaaaaagtgcagcagaactaaagcaacctcaacagacaaaa |
6232313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 380510 - 380663
Alignment:
| Q |
101 |
actgctgataaccacagccaacctgcacccaaaccaaaactaaacccctgaaccggcagctataacagaagaacagcaaaaacagaaaaccggcatagca |
200 |
Q |
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| T |
380510 |
actgctgataaccacagccaacctgcacccaaaacaaaactaaacccctgaaccggcaactataacagaaaaatagcaacaacagaaaactggcatagca |
380609 |
T |
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| Q |
201 |
gaaaacaaaagcccaaaaggtgcagcagaactacagcaacctcaacagacaaaa |
254 |
Q |
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| T |
380610 |
gaaaacaatagcccaaaaggtgcagcagaactacaacaacctcaacagacaaaa |
380663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 42197927 - 42197830
Alignment:
| Q |
8 |
gttgcataattatccttttcaaaaagtttaccaatgaggaaaactataacatttttatgacaaa----ctctattcacgaacttagagagagcaagaa |
101 |
Q |
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| T |
42197927 |
gttgcatacttatccttttcaaaaagtttactaatgaggaaaactataacatttttatgacaaactctctctattcacgaacttagagagagcaagaa |
42197830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 12361419 - 12361497
Alignment:
| Q |
17 |
ttatccttttcaaaaagtttaccaatgaggaaaactataacatttttatgacaaactctattcacgaacttagagagag |
95 |
Q |
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| T |
12361419 |
ttatccttttcaagaaatttactaacgacgaaaattataacactttcatgacaaactctattcgcgaacttagggagag |
12361497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 12326693 - 12326624
Alignment:
| Q |
22 |
cttttcaaaaagtttaccaatgaggaaaactataacatttttatgacaaactctattcacgaacttagag |
91 |
Q |
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| T |
12326693 |
cttttcaaggagtttactactgaggaaagctataacattttcatgacgaattctattcgcgaacttagag |
12326624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 12355539 - 12355590
Alignment:
| Q |
34 |
tttaccaatgaggaaaactataacatttttatgacaaactctattcacgaac |
85 |
Q |
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| T |
12355539 |
tttactaatgaggaaaactataacactttcacgaaaaactctattcacgaac |
12355590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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