View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504_1D_low_53 (Length: 259)
Name: NF1504_1D_low_53
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_53 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 5394558 - 5394312
Alignment:
| Q |
13 |
gtgatgttttcaagtggaaacatttgtggaaggtgttagcggaacagtttgagatcgatgattatggatttgaggaggggtcggagttgaggttgtcgga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5394558 |
gtgatgttttcaagtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcgga |
5394459 |
T |
|
| Q |
113 |
gatgatgaaagatatgggtggtgtgtgggaagagattgtgagggaaaatgggttattgcacacaaagcttgaagaagttggagattggtggtttgcagat |
212 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||| |||| || ||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5394458 |
tttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagat |
5394359 |
T |
|
| Q |
213 |
tttagtttgagactggagggtgtgttggattctatgaacaaagctaa |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5394358 |
tttagtttgagactggagggtgtgttggattctatgaacaaagctaa |
5394312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 5391018 - 5390780
Alignment:
| Q |
15 |
gatgttttcaagtggaaacatttgtggaaggtgttagcggaacagtttgagatcgatgattatggatttgaggaggggtcggagttgaggttgtcggaga |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5391018 |
gatgttttcaggtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcggatt |
5390919 |
T |
|
| Q |
115 |
tgatgaaagatatgggtggtgtgtgggaagagattgtgagggaaaatgggttattgcacacaaagcttgaagaagttggagattggtggtttgcagattt |
214 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||| |||| || ||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5390918 |
tgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattt |
5390819 |
T |
|
| Q |
215 |
tagtttgagactggagggtgtgttggattctatgaacaa |
253 |
Q |
| |
|
|| || ||| ||||||||||||||||| ||||||||| |
|
|
| T |
5390818 |
tatgtttagagtggagggtgtgttggatagtatgaacaa |
5390780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 5399737 - 5399499
Alignment:
| Q |
15 |
gatgttttcaagtggaaacatttgtggaaggtgttagcggaacagtttgagatcgatgattatggatttgaggaggggtcggagttgaggttgtcggaga |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5399737 |
gatgttttcaggtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcggatt |
5399638 |
T |
|
| Q |
115 |
tgatgaaagatatgggtggtgtgtgggaagagattgtgagggaaaatgggttattgcacacaaagcttgaagaagttggagattggtggtttgcagattt |
214 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||| |||| || ||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399637 |
tgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattt |
5399538 |
T |
|
| Q |
215 |
tagtttgagactggagggtgtgttggattctatgaacaa |
253 |
Q |
| |
|
|| || ||| ||||||||||||||||| ||||||||| |
|
|
| T |
5399537 |
tatgtttagagtggagggtgtgttggatagtatgaacaa |
5399499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 47350003 - 47350071
Alignment:
| Q |
13 |
gtgatgttttcaagtggaaacatttgtggaaggtgttagcggaacagtttgagatcgatgattatggat |
81 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||| || ||||||| |||||||| || || ||||||| |
|
|
| T |
47350003 |
gtgatgtttttaggtggaaacaattgtggaaggttttgacggaacaatttgagattgaggagtatggat |
47350071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University