View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_54 (Length: 258)

Name: NF1504_1D_low_54
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_54
NF1504_1D_low_54
[»] chr5 (6 HSPs)
chr5 (2-258)||(12597268-12597524)
chr5 (114-193)||(15805346-15805425)
chr5 (18-104)||(15805133-15805219)
chr5 (16-90)||(20840260-20840334)
chr5 (45-123)||(15805208-15805286)
chr5 (32-102)||(15805243-15805313)
[»] chr8 (12 HSPs)
chr8 (11-88)||(31177841-31177918)
chr8 (15-104)||(3389166-3389255)
chr8 (157-215)||(3389031-3389089)
chr8 (15-103)||(3319748-3319836)
chr8 (32-102)||(3366280-3366350)
chr8 (32-93)||(3319813-3319874)
chr8 (159-203)||(3319985-3320029)
chr8 (157-203)||(3405545-3405591)
chr8 (114-203)||(31177968-31178057)
chr8 (155-193)||(3430516-3430554)
chr8 (11-76)||(3396769-3396834)
chr8 (157-193)||(3366429-3366465)
[»] chr7 (1 HSPs)
chr7 (117-201)||(8369937-8370021)
[»] chr2 (1 HSPs)
chr2 (159-215)||(14765610-14765666)
[»] chr3 (1 HSPs)
chr3 (7-104)||(6903633-6903730)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 12597268 - 12597524
Alignment:
Q  2 gtcgactgatatgaaaattgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatca 101  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597268 gtcgactgataaaaaaattgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatca 12597367  T
Q  102 cttactgtaaaaaatgagccattactgaagccaaacggaaaaatattcataggatttgcaaagagagtgggagaatgtttgtgcttgaaccaaaattgag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597368 cttactgtaaaaaatgagccattactgaagccaaacggaaaaatattcataggatttgcaaagagagtgggagaatgtttgtgcttgaaccaaaattgag 12597467  T
Q  202 atatccacaattttgtattgaccttgtatgggtagcacttggaatagtactgcgaat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597468 atatccacaattttgtattgaccttgtatgggtagcacttggaatagtactgcgaat 12597524  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 15805346 - 15805425
Alignment:
Q  114 aatgagccattactgaagccaaacggaaaaatattcataggatttgcaaagagagtgggagaatgtttgtgcttgaacca 193  Q
    ||||| ||||||| |||  ||||  |||||||||| | | || ||||||||||||||||||||||||| |||||||||||    
T  15805346 aatgaaccattaccgaacgcaaatagaaaaatatttacaagacttgcaaagagagtgggagaatgtttatgcttgaacca 15805425  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 15805133 - 15805219
Alignment:
Q  18 attgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatcactt 104  Q
    ||||||||||||||||||||||| |||||| ||||||  | || ||||| |||| |||| || |||||| || ||| ||||||||||    
T  15805133 attgagccattacatgaagtggaagtgcaatcatcacttagtgtgaaaatggaggcatcggccgaagagcaactacaaccatcactt 15805219  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 20840260 - 20840334
Alignment:
Q  16 aaattgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaag 90  Q
    ||||||| ||| ||| ||||||||| | ||||||||||||  ||| |||||||||||||||| |||||| |||||    
T  20840260 aaattgaaccaatacctgaagtggacgcgcaaccatcacctgatgcgaaaacggagccatcacctgaagtggaag 20840334  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 15805208 - 15805286
Alignment:
Q  45 caaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatcacttactgtaaaaaatgagccat 123  Q
    ||||||||||   ||| |||||||||| |||||||||||||||| |||| |||||||| || ||| ||||  |||||||    
T  15805208 caaccatcacttgatgtgaaaacggaggcatcagctgaagaggatgtacaaccatcacctaatgtgaaaatagagccat 15805286  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 15805243 - 15805313
Alignment:
Q  32 tgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatcac 102  Q
    ||||| ||| || ||||||||||| |||| |||||  |||||||||||| ||||||||| || ||||||||    
T  15805243 tgaagaggatgtacaaccatcacctaatgtgaaaatagagccatcagctaaagaggaagcacaaccatcac 15805313  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 31177841 - 31177918
Alignment:
Q  11 tatgaaaattgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagagga 88  Q
    |||| |||||||||||||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||||||||    
T  31177841 tatggaaattgagccattacatgaagtggaaatgcaaccatcacctaatgtgaaaacggagccatcagctgaagagga 31177918  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 3389255 - 3389166
Alignment:
Q  15 aaaattgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatcactt 104  Q
    ||||| ||||||||||||||||||||  || |||| ||||| ||||  |||| ||| |||||||||||||||||||||| ||||||||||    
T  3389255 aaaatggagccattacatgaagtggaattgaaaccgtcacccaatgtaaaaatggatccatcagctgaagaggaagtacaaccatcactt 3389166  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 3389089 - 3389031
Alignment:
Q  157 ttgcaaagagagtgggagaatgtttgtgcttgaaccaaaattgagatatccacaatttt 215  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||||    
T  3389089 ttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttt 3389031  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 3319748 - 3319836
Alignment:
Q  15 aaaattgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatcact 103  Q
    ||||| ||||||||||||||||||||  | ||||||||||| ||||  ||||| ||| |||||||||||| |||| ||| |||||||||    
T  3319748 aaaatggagccattacatgaagtggaattccaaccatcacccaatgtaaaaaccgagacatcagctgaagtggaaatacaaccatcact 3319836  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 3366280 - 3366350
Alignment:
Q  32 tgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatcac 102  Q
    ||||| ||| ||||||||||| || |||| |||||| || |||||||||||||||||||||| ||||||||    
T  3366280 tgaagaggatgtgcaaccatctcctaatgtgaaaacagaaccatcagctgaagaggaagtacaaccatcac 3366350  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 3319813 - 3319874
Alignment:
Q  32 tgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtac 93  Q
    |||||||||  | |||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  3319813 tgaagtggaaatacaaccatcactgaatttgaaaacggagccatcagctgaagaggaagtac 3319874  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 3319985 - 3320029
Alignment:
Q  159 gcaaagagagtgggagaatgtttgtgcttgaaccaaaattgagat 203  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  3319985 gcaaagagagtgggaaaatgtttatgcttgaaccaaaattgagat 3320029  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 3405591 - 3405545
Alignment:
Q  157 ttgcaaagagagtgggagaatgtttgtgcttgaaccaaaattgagat 203  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||    
T  3405591 ttgcaaagagagtgggaggatgtttatgcttgaaccagaattgagat 3405545  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 31177968 - 31178057
Alignment:
Q  114 aatgagccattactgaagccaaacggaaaaatattcataggatttgcaaagagagtgggagaatgtttgtgcttgaaccaaaattgagat 203  Q
    ||||| ||| ||| |||| ||||  ||||||| |||| | || ||||||||||| ||||||||||||| ||||||| ||| |||||||||    
T  31177968 aatgaaccaataccgaagacaaatagaaaaatcttcacaagacttgcaaagagactgggagaatgtttatgcttgatccagaattgagat 31178057  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 3430516 - 3430554
Alignment:
Q  155 atttgcaaagagagtgggagaatgtttgtgcttgaacca 193  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  3430516 atttgcaaagagagtgggagaatgtttatgcatgaacca 3430554  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 3396834 - 3396769
Alignment:
Q  11 tatgaaaattgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatc 76  Q
    |||| ||||||| ||| ||| |||||||||||||||||||||||   ||| |||||||||| ||||    
T  3396834 tatggaaattgaaccaatacctgaagtggaggtgcaaccatcactcgatgtgaaaacggagtcatc 3396769  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 3366429 - 3366465
Alignment:
Q  157 ttgcaaagagagtgggagaatgtttgtgcttgaacca 193  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  3366429 ttgcaaagagagtgggagaatgtttatgcatgaacca 3366465  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 8370021 - 8369937
Alignment:
Q  117 gagccattactgaagccaaacggaaaaatattcataggatttgcaaagagagtgggagaatgtttgtgcttgaaccaaaattgag 201  Q
    ||||||||||  ||||||||   ||| || || ||| ||||||||||| |||| ||| ||||||| |||||||||||||||||||    
T  8370021 gagccattaccaaagccaaatcaaaatatctttataagatttgcaaagggagtaggaaaatgtttatgcttgaaccaaaattgag 8369937  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 14765666 - 14765610
Alignment:
Q  159 gcaaagagagtgggagaatgtttgtgcttgaaccaaaattgagatatccacaatttt 215  Q
    ||||||||||| ||| ||||||| ||||||||||||||| ||||| || ||||||||    
T  14765666 gcaaagagagtaggaaaatgtttatgcttgaaccaaaatcgagatctcaacaatttt 14765610  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 6903730 - 6903633
Alignment:
Q  7 ctgatatgaaaattgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatcactt 104  Q
    ||||| |||| || |||||||||| |||| |||| |||||||||||| | |||| ||||| |||| ||| |  |||||| ||||| | ||||||||||    
T  6903730 ctgatgtgaagatggagccattacctgaactggaagtgcaaccatcatctaatgtgaaaagggagtcattacttgaagatgaagtgcaaccatcactt 6903633  T

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