View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_56 (Length: 254)
Name: NF1504_1D_low_56
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 35187101 - 35186860
Alignment:
| Q |
7 |
gagatgaaaggtgcttcattgttccaattatgaattggattgaatgggccgtatagacatattatctcatgttcttcacttttccaagccttcttgtatg |
106 |
Q |
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| T |
35187101 |
gagaagaaaggtgcttcattgttccaattatgaattggattgaatgggccgtatagacatattatctcatgttcttcacttttccaagccttcttgtatg |
35187002 |
T |
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| Q |
107 |
gttagggtgaattcgatccggtttcaaggtcttcttgtacaatgttagtttatttgcttcttgctatactcaattaaaacaaacctaaaaatgactcaaa |
206 |
Q |
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| T |
35187001 |
gttagggtgaattcgatccggttttaaggtcttcttgtacaatgttagtttatttgcttcttgctatactcaattaaaacaaacataaaaataactcaaa |
35186902 |
T |
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| Q |
207 |
tggggcaagggttgtaaaatgactcctaaaggacactaaatt |
248 |
Q |
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| T |
35186901 |
tggggcaagggttgtaaaatgactcctaaaggacactaaatt |
35186860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 35189589 - 35189443
Alignment:
| Q |
100 |
ttgtatggttagggtgaattcgatccggtttcaaggtcttcttgtacaatgttagtttatttgcttcttgctatactcaattaaaacaaacctaaaaatg |
199 |
Q |
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| T |
35189589 |
ttgtatggttagggtgaattcgatccgatttcaaggtctttttgtacaatgttaatttatttgcttcttgctatactcaattaaaacaaacctaaaaatg |
35189490 |
T |
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| Q |
200 |
actcaaatggggcaagggttgtaaaatgactcctaaaggacactaaa |
246 |
Q |
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| T |
35189489 |
actcaaatggggcaagggctgtaaaatgactcctaaaggacactaaa |
35189443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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