View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_57 (Length: 254)
Name: NF1504_1D_low_57
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 45 - 248
Target Start/End: Complemental strand, 39608956 - 39608753
Alignment:
| Q |
45 |
gtcaaactccccgtgatttcaaacatgcacttaattttgaagccaaaatctattctactcaacaaaacaaaaacatatcaaaatcaattttatgttccta |
144 |
Q |
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| T |
39608956 |
gtcaaactcctcatgattccaaaaatacactaaattttaaagccaaaatcaattctactcaacaaaacaaaaacatatcaaaatcaattttatgttccta |
39608857 |
T |
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| Q |
145 |
gaatcactttagtttctcgtaaataaaagtgaatatccaaacatgaaaatcaaagaaaaccagcagaggccaagtaatctgcttgatcaatagatagtcg |
244 |
Q |
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| T |
39608856 |
gaatcactttagtttctcgtaaataaaagtgaatatgcaaacatgaaaatcaaagaaaaccagcagaggccaagtaatctgcttgatcaatagatagtcg |
39608757 |
T |
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| Q |
245 |
atcc |
248 |
Q |
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|||| |
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| T |
39608756 |
atcc |
39608753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 39609326 - 39609201
Alignment:
| Q |
11 |
atgaacaataaaatcatggtactgccgtgatttcgtcaaactccccgtgatttcaaacatgcacttaattttgaagccaaaatctattctactcaacaaa |
110 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39609326 |
atgaacaataaaatcatggtaccgctgtgatttcgtcaaactccccgtgatttcaaacatgcacttaattttgaagccaaaatctattctactcaacaaa |
39609227 |
T |
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| Q |
111 |
acaaaaacatatcaaaatcaatttta |
136 |
Q |
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| T |
39609226 |
acaaaaacatgtcaaaatcaacttta |
39609201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 39609455 - 39609339
Alignment:
| Q |
20 |
aaaatcatggtactgccgtgatttcgtcaaactccccgtgatttcaaacatgcacttaattttgaagccaaaatctattctactcaacaaaacaaaaaca |
119 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39609455 |
aaaatcatggtacagccgtgatttcgtcaaactccccgtaatttcaaacatgcacttaattttgaagccaaaatcaattctactcaacaaaacaaaaaca |
39609356 |
T |
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| Q |
120 |
tatcaaaatcaatttta |
136 |
Q |
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| |||||||||| |||| |
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| T |
39609355 |
tgtcaaaatcaacttta |
39609339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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