View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_58 (Length: 254)
Name: NF1504_1D_low_58
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 36462716 - 36462929
Alignment:
| Q |
22 |
caatttgcattgcctttgccttataaaatctaacaccgttaaaaacacaacctttaaccaagttctctttaagtttccgtttattaacccttccgtaaca |
121 |
Q |
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| T |
36462716 |
caatttgcattgcctttgccttataaaatctaacaccgttaaaaacacaacctttaaccaagttctctttaagtttccttttattaacccttccgtaaca |
36462815 |
T |
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| Q |
122 |
acgatccaaatacttggtggttctatcatcaatataaatagaagttataggccatgttttatctaaacaatcttctagcccaagaccttcaaactcatca |
221 |
Q |
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| T |
36462816 |
acgatccaaatacttggtggttctatcatcaatataaatagaagttataggccatgttttatctaaacaatcttctagcccaagaccttcaaactcatca |
36462915 |
T |
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| Q |
222 |
aaccaaacaccata |
235 |
Q |
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| T |
36462916 |
aaccaaacaccata |
36462929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 36455832 - 36455636
Alignment:
| Q |
39 |
gccttataaaatctaacaccgttaaaaacacaacctttaaccaagttctctttaagtttccgtttattaacccttccgtaacaacgatccaaatacttgg |
138 |
Q |
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| T |
36455832 |
gccttgtaaaatctaactccgttaaaaacacaacctttaaccaatttctccttaagtttcttcctactaacccttccatagcaacgatccaaatactttg |
36455733 |
T |
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| Q |
139 |
tggttctatcatcaatataaatagaagttataggccatgttttatctaaacaatcttctagcccaagaccttcaaactcatcaaaccaaacaccata |
235 |
Q |
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| T |
36455732 |
ttttgttatcatcgatataaatagaagccataggccatgttttatctaaacaatcttctagcccaagtccttcaaactcatccaaccacacaccata |
36455636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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