View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_61 (Length: 251)
Name: NF1504_1D_low_61
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_61 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 1047340 - 1047573
Alignment:
| Q |
18 |
cagaaatagcattctcattcttgtgcctcttggtgctactgttgtttttagtggttgcctcattcactgagacattattttcctatcaccattggtgaac |
117 |
Q |
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| T |
1047340 |
cagaaatagcattctcattcttgtgcctcttggtgctactgttgtttttagtggttgcctcattcactgagacattattttcctatcaccattggtgaac |
1047439 |
T |
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| Q |
118 |
aaggctctttaatacataatttggtattaaagcattgtggattagtctttgttcactttcaagacaagtgtgttgaccagagtctatccactctggaatt |
217 |
Q |
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| T |
1047440 |
aaggctctttaatacataatttggtattaaagcattgtggattagtctttgttcactttcaagacaagtgtgttgaccagagtctatacactctggaatt |
1047539 |
T |
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| Q |
218 |
gaaattctatcataagtgtgccctgatgatagaa |
251 |
Q |
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| T |
1047540 |
gaaattctatcataagtgtgccctgatgatagaa |
1047573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 1023308 - 1023097
Alignment:
| Q |
19 |
agaaatagcattctcattcttgtgcctcttggtgctactgtt-gtttttagtggttgcctcattcactgagacattattttcctatcaccattggtgaac |
117 |
Q |
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| T |
1023308 |
agaaatagcattctcattcttgtgcctcttggtggcactgtttgttgttagtggttgcctcattcactgcaacattactttcctag-----ttggcaaac |
1023214 |
T |
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| Q |
118 |
aaggctctttaatacataatttggtattaaagcattgtggattagtctttgttcactttcaagacaagtgtgttgaccagagtctatccactctggaatt |
217 |
Q |
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| T |
1023213 |
aaggatctttaatgcataatttggt-----------gtgaattagtctttgtttactttcaggacaagtgtggtcaccagagtctatacactctgcaatt |
1023125 |
T |
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| Q |
218 |
gaaattctatcataagtgtgccctgatgata |
248 |
Q |
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| T |
1023124 |
gaaattct---ataagtgtgccctgatgata |
1023097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 1010281 - 1010213
Alignment:
| Q |
19 |
agaaatagcattctcattcttgtgcctcttggtgctactg-ttgtttttagtggttgcctcattcactg |
86 |
Q |
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| T |
1010281 |
agaaatatcattcacattcttgtgcctcttggtgctattgtttattgttagtggttgcctcattcactg |
1010213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 1020843 - 1020801
Alignment:
| Q |
195 |
cagagtctatccactctggaattgaaattctatcataagtgtg |
237 |
Q |
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| T |
1020843 |
cagagtctgtccactctgcagttgaaattctatcataagtgtg |
1020801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 40642613 - 40642784
Alignment:
| Q |
19 |
agaaatagcattctcattcttgtgcctcttggtgctactgtt-gtttttagtggttgcctcattcactgagacattattttcctatcaccattggtgaac |
117 |
Q |
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||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
40642613 |
agaaatagcattctcattcttgtgcctcttgatgctactttttgttgttagtggtttcctcattgactgagacattattttcctagcaccattggtgaac |
40642712 |
T |
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| Q |
118 |
aaggctctttaatacataatttggtattaaagcattgtggattagtctttgttcactttcaagacaagtgtg |
189 |
Q |
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| T |
40642713 |
aaggctctttaatatataatttagtatgaaagcattgtgaattagtctttgttcactttcaggacaagtgtg |
40642784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 35820939 - 35820712
Alignment:
| Q |
22 |
aatagcattctcattcttgtgcctcttggtgctact---gttgtttttagtggttgcctcattcactgagacattattttcctatcaccattggtgaaca |
118 |
Q |
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|||||||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||||||||| | |||||| ||||| || |||||||| |||||| |
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| T |
35820939 |
aatagcattctcattcttgtgccttttgctgctactattgttgttttttgtgattgcctcattcattttgacattgttttcatagcaccattgatgaaca |
35820840 |
T |
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| Q |
119 |
aggctctttaatacataatttggtattaaagcattgtggattagtctttgttcactttcaagacaagtgtgttgaccagagtctatccactctggaattg |
218 |
Q |
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| T |
35820839 |
aggctcttcaacgcatagtttggtattagagcagtgtgaattagtctttgtccacttttaggacaagtgtggtgaccagagttaatccattctgcaattg |
35820740 |
T |
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| Q |
219 |
aaattctatcataagtgtgccctgatga |
246 |
Q |
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| T |
35820739 |
aaattctatcataagtgtgtcctgatga |
35820712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 8312696 - 8312729
Alignment:
| Q |
19 |
agaaatagcattctcattcttgtgcctcttggtg |
52 |
Q |
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| T |
8312696 |
agaaatagcattctcattcttgtgcctcttggtg |
8312729 |
T |
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