View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_62 (Length: 250)

Name: NF1504_1D_low_62
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_62
NF1504_1D_low_62
[»] chr2 (13 HSPs)
chr2 (1-242)||(39379613-39379854)
chr2 (25-211)||(39386437-39386626)
chr2 (63-200)||(39139771-39139908)
chr2 (25-160)||(39179534-39179673)
chr2 (65-167)||(39419997-39420100)
chr2 (22-154)||(39156683-39156817)
chr2 (22-116)||(39188437-39188534)
chr2 (102-211)||(39204564-39204674)
chr2 (71-206)||(39452040-39452177)
chr2 (60-167)||(39224535-39224643)
chr2 (22-115)||(39145025-39145119)
chr2 (63-109)||(39372054-39372100)
chr2 (63-205)||(39471627-39471770)
[»] chr5 (1 HSPs)
chr5 (60-211)||(33563134-33563292)
[»] chr7 (1 HSPs)
chr7 (98-206)||(19810024-19810134)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39379613 - 39379854
Alignment:
Q  1 aaatatctaccaattaacaacaacaaaaatctaagcagattggacagaacattcaaaaattgtcaaaccatttagaaaatagaaaagatacataaataga 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379613 aaatatctaccaattaacaacaacaaaaatctaagcagatcggacagaacattcaaaaattgtcaaaccatttagaaaatagaaaagatacataaataga 39379712  T
Q  101 gagataaatatgaagtttatttcatattccaagattaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagcca 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379713 gagataaatatgaagtttatctcatattccaagattaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagcca 39379812  T
Q  201 attacatatcaagagttgtcctattttcttaaaaggattcat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39379813 attacatatcaagagttgtcctattttcttaaaaggattcat 39379854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 39386437 - 39386626
Alignment:
Q  25 aaaaatctaagcagattggacagaacatt-caaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatat-gaagtttattt 122  Q
    ||||| |||||||||||| || ||| ||| ||||| ||||||||||||||||||| ||||| |||||||||||  ||||||||||| | ||||| || ||    
T  39386437 aaaaaactaagcagattgaactgaatatttcaaaatttgtcaaaccatttagaaactagaagagatacataaaaggagagataaatttcgaagtctaatt 39386536  T
Q  123 catattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaattacatatca 211  Q
    ||| ||| ||| ||| | | ||||| ||  ||| ||| | |||||| | |||| |||| ||||||||||||| |||||||||||| ||||    
T  39386537 cattttcaaagcattgaaagcaagatgttgattatctattaacaaacgcgagatctgttggggaaacaaaatcaagccaattacaaatca 39386626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 39139908 - 39139771
Alignment:
Q  63 tcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctcta 161  Q
    |||||||||||| || || ||| |||||||| ||  ||||||| ||| |||||| |||||||| ||||| | ||||||||||||| ||||||| |||||     
T  39139908 tcaaaccatttataacatggaagagatacatgaa--gagagatgaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctctt 39139811  T
Q  162 aacaaaggtgagaactg-tgggggaaacaaaattaagcca 200  Q
    |||||| |  ||||||| ||||||||||||||| ||||||    
T  39139810 aacaaatgatagaactgttgggggaaacaaaatgaagcca 39139771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 39179673 - 39179534
Alignment:
Q  25 aaaaatctaagcagattggacagaacatt-caaaaattgtcaaaccatttagaaaatagaaaagatacat--aaatagagagataaatatgaagtttatt 121  Q
    ||||| |||||||||||| || ||||||| || || || |||||||||||||||||||||| ||||||||  ||| |||||||||||| | |||| || |    
T  39179673 aaaaaactaagcagattgaactgaacatttcacaatttatcaaaccatttagaaaatagaagagatacataaaaagagagagataaatttcaagtctaat 39179574  T
Q  122 tcatattccaag-attaacaccaagacgtcaattctctct 160  Q
    |||| ||| ||| ||||| ||||||| ||||||| |||||    
T  39179573 tcattttcaaagcattaaaaccaagatgtcaattttctct 39179534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 39419997 - 39420100
Alignment:
Q  65 aaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaa 163  Q
    |||||||||||||||| ||| |||| | |||| |||||||||||| | |||| |||||||| || |||| |||||||| |||| ||||||| ||||| ||    
T  39419997 aaaccatttagaaaatggaagagatgcgtaaaaagagagataaatttcaagtatatttcattttacaagcattaacacaaagatgtcaattttctcttaa 39420096  T
Q  164 caaa 167  Q
    ||||    
T  39420097 caaa 39420100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 39156817 - 39156683
Alignment:
Q  22 aacaaaaatctaagcagattggacagaacattcaaaaattgtcaaaccatttagaaaatagaaaagatacat-aaatagagagataaatatgaagtttat 120  Q
    ||||||||||||||| |||||||| ||| |||||||  | |||| |||||||||||||| ||| ||| |||| ||| |||||||| | | | || | |||    
T  39156817 aacaaaaatctaagctgattggactgaatattcaaacttcgtcataccatttagaaaatggaagagacacataaaaaagagagatcagtttcaattctat 39156718  T
Q  121 ttcatattccaag-attaacaccaagacgtcaatt 154  Q
    ||||| ||||||| ||||||||||||  |||||||    
T  39156717 ttcattttccaagcattaacaccaagttgtcaatt 39156683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 39188437 - 39188534
Alignment:
Q  22 aacaaaaatctaagcagattggacagaaca-ttcaaaaattgtcaaaccatttagaaaatagaaaagatac--ataaatagagagataaatatgaagt 116  Q
    ||||||||||| |||||||||||| ||| | ||||||| ||||||||||||||  ||||||||| | ||||  ||||| |||||||||||| ||||||    
T  39188437 aacaaaaatcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataaaaagagagataaatttgaagt 39188534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 39204564 - 39204674
Alignment:
Q  102 agataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactgtgggggaaacaaaattaagcca 200  Q
    |||||||| | |||| ||||||||  || ||| ||||| || |||| ||||||| ||||  |||||| |||||| |||| ||||||||||||| ||||||    
T  39204564 agataaatttcaagtctatttcattctcaaagcattaaaacgaagatgtcaattttctcgtaacaaatgtgagatctgttggggaaacaaaatgaagcca 39204663  T
Q  201 attacatatca 211  Q
    |||||||||||    
T  39204664 attacatatca 39204674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 39452177 - 39452040
Alignment:
Q  71 tttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaacaaagg 169  Q
    |||||||||| ||| |||| |||||| ||||||||| || | ||||  ||||||| ||||||| |||||||| |||| ||||||| || || |||||| |    
T  39452177 tttagaaaatggaagagatgcataaaaagagagatacatttcaagtcaatttcattttccaagcattaacactaagatgtcaattttcccttaacaaatg 39452078  T
Q  170 tgagaactgt-gggggaaacaaaattaagccaattaca 206  Q
     || ||| || |||||||||||||| || | |||||||    
T  39452077 agacaacagttgggggaaacaaaatgaatcgaattaca 39452040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 39224643 - 39224535
Alignment:
Q  60 ttgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctct 158  Q
    ||||||||||||||||||||||| | |||||||  || |||||||||||| | || | | |||||| ||| ||| ||||| ||||||  ||||||| |||    
T  39224643 ttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaatttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttct 39224544  T
Q  159 ctaaacaaa 167  Q
    || ||||||    
T  39224543 cttaacaaa 39224535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 39145119 - 39145025
Alignment:
Q  22 aacaaaaatctaagcagattggacagaaca-ttcaaaaattgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaag 115  Q
    |||||||| || |||||||||||| ||| | ||||||| ||||||||||||||  ||||||||| | ||||||| | | ||||||| || |||||    
T  39145119 aacaaaaagcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataaaaagagatatatttgaag 39145025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 39372100 - 39372054
Alignment:
Q  63 tcaaaccatttagaaaatagaaaagatacataaatagagagataaat 109  Q
    |||||||||||| ||||||||| |||||||||||  |||||||||||    
T  39372100 tcaaaccatttataaaatagaagagatacataaaaggagagataaat 39372054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 39471627 - 39471770
Alignment:
Q  63 tcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctcta 161  Q
    ||||||||||| ||||||  |  ||||||||||| |||||| ||||  | | || |||||||| ||||||  ||||||||||||| ||||||| |||||     
T  39471627 tcaaaccatttcgaaaatgcatgagatacataaa-agagaggtaaaattcatgtctatttcattttccaatcattaacaccaagatgtcaattttctctt 39471725  T
Q  162 aacaaaggtgagaactg-tgggggaaacaaaattaagccaattac 205  Q
    |||||| |  ||||||| | | ||| ||||||| |||||||||||    
T  39471726 aacaaatgatagaactgttagcggacacaaaataaagccaattac 39471770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 211
Target Start/End: Complemental strand, 33563292 - 33563134
Alignment:
Q  60 ttgtcaaaccatttagaaaatagaaaagatacataaatagagagataaatatgaagtttatttcatattc-------caagattaacaccaagacgtcaa 152  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||| | |||| |||||||| |||        ||| |||| | ||||| |||||    
T  33563292 ttgtcaaaccatttagaaaatagaagagatacataaaatgagagataaatttcaagtctatttcattttcaaagcattaagtttaaaatcaagatgtcaa 33563193  T
Q  153 ttctctctaaacaaaggtgagaactgtgggggaaacaaaattaagccaattacatatca 211  Q
    || ||||| |||||| |||||| |||| || |||||||||| |||||||||||||||||    
T  33563192 ttttctcttaacaaatgtgagatctgttggtgaaacaaaatgaagccaattacatatca 33563134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 19810134 - 19810024
Alignment:
Q  98 agagagataaatatgaagtttatttcatattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactg-tgggggaaacaaaatta 195  Q
    |||||||||||| |||||| ||||| || ||||||| |||||||| | || ||||||| ||||| |||||| |  ||||||| | ||||||||||||| |    
T  19810134 agagagataaatttgaagtctatttgattttccaagcattaacactatgatgtcaattttctcttaacaaatgatagaactgttaggggaaacaaaatga 19810035  T
Q  196 agccaattaca 206  Q
    |||||| ||||    
T  19810034 agccaactaca 19810024  T

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