View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_64 (Length: 244)
Name: NF1504_1D_low_64
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 32897890 - 32897680
Alignment:
| Q |
15 |
ctccaattgttaaaatcaccacggttagagttgtattggatttagcttcaattaaaggttagcatctagaacaattagatgtcaacaatgtttcttaggc |
114 |
Q |
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| T |
32897890 |
ctccaattgttaaaatcagcacggttagagttgtattggatttagcttcaattaaaggttagcatctagaacaattagatgtcaacaatgtttcttaggc |
32897791 |
T |
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| Q |
115 |
tttgatggttcaacaaatgtgtgcaaattgcataaatctttatatggtttaaagcaagctagtgtggacaatggcactctaagctttcatcttcttttta |
214 |
Q |
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| T |
32897790 |
tttgatggttgaacaaatgtgtgcaaattgcataaatctttatatggtttaaagcaagcta--gtggacaatggcattctaagctttcatcttcctttta |
32897693 |
T |
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| Q |
215 |
gtttccttgagat |
227 |
Q |
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||||||||||||| |
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| T |
32897692 |
gtttccttgagat |
32897680 |
T |
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