View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_66 (Length: 243)
Name: NF1504_1D_low_66
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_66 |
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| [»] scaffold0154 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 27830 - 27603
Alignment:
| Q |
13 |
gaaaagaaaaccataaatgaaaagaaaacagcaagaacacgaaattagttttaatgaaaattagaaaggggaaaacgaaattgttgtgaggaagatgaaa |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27830 |
gaaaagaaaaccgtaaatgaaaagaaaacagcaagaacacgaaattagttttaatgaaaattagaaaggggaaaacgaaattgttgtgaggaagatgaaa |
27731 |
T |
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| Q |
113 |
tttgtgattatgtgtttatggaagtgagaaaattccaacaaagaggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaataaga |
212 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27730 |
tttgtgattatgtgtttatgaaagtgagaaaattccagcaaagaggaacaaatctaaacctcccacatccatgttgaaatgctagaaatggtgaataaga |
27631 |
T |
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| Q |
213 |
tattcatatattcatgttttgcaaaatg |
240 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
27630 |
tattcatatattcatgttttgcaaaatg |
27603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 16043821 - 16043592
Alignment:
| Q |
13 |
gaaaagaaaaccataaatgaaaagaaaacagcaagaacacgaaattagttttaatgaaaattagaaaggggaaaacgaaattgttgtgaggaagatgaaa |
112 |
Q |
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|||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16043821 |
gaaaagaaaatcgtaaatgaaaagaaaactgcaagaacacgaaattagttttaatgaaaattagaaaggggaaaacgaaattgttgtgaggaagatgaaa |
16043722 |
T |
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| Q |
113 |
tttgtgattatgtgtttatggaagtgagaaaattccaacaaagaggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaataaga |
212 |
Q |
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| T |
16043721 |
tttgtgattatgtgtttatggaagtgagaaaattacagcaaagaggaacaaatctaaacctctcacacccatgttgaaatgctagaaatggtgaataaga |
16043622 |
T |
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| Q |
213 |
tattcatatattcatgttttgcaaaatggtg |
243 |
Q |
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| T |
16043621 |
tattcatatattcatg-tttgcaaaatggtg |
16043592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 28 - 243
Target Start/End: Original strand, 55500608 - 55500823
Alignment:
| Q |
28 |
aatgaaaagaaaacagcaagaacacgaaattagttttaatgaaaattagaaaggggaaaacgaaattgttgtgaggaagatgaaatttgtgattatgtgt |
127 |
Q |
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| T |
55500608 |
aatgaaaagaaaactgcaagaacacgaaattagttttaatgaaaattagaaaggggaaaacaaaattgttgtgaggaagatgaaatttgtgattatgtgt |
55500707 |
T |
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| Q |
128 |
ttatggaagtgagaaaattccaacaaagaggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaataagatattcatatattcat |
227 |
Q |
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| T |
55500708 |
ttatggaagtgagaaaattccagcaaagaagaacaaatctaaacctctcacacccatgttgaaatgctagaaatggtgaataagatattcatatattcat |
55500807 |
T |
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| Q |
228 |
gttttgcaaaatggtg |
243 |
Q |
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| T |
55500808 |
gttttgcaaaatggtg |
55500823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 43079617 - 43079438
Alignment:
| Q |
28 |
aatgaaaagaaaacagcaagaacacgaaattagttttaatgaaaattagaaaggggaaaacgaaattgttgtgaggaagatgaaatttgtgattatgtgt |
127 |
Q |
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||||||||||| | || ||||||| |||||| ||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| || | |
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| T |
43079617 |
aatgaaaagaatatagtaagaacataaaattaatttgaatgaaaattagaatggggaaa-cgtaattgttgtgaggaagatgaaatttgtgattctggat |
43079519 |
T |
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| Q |
128 |
ttatggaagtgagaaaattccaacaaagaggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaat |
208 |
Q |
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| T |
43079518 |
ttatggaagtgagaaaatttcagcaaaggggaacaaatctaaacctcccacacttatgttgaaatgctagaaatagtgaat |
43079438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 40426938 - 40427168
Alignment:
| Q |
13 |
gaaaagaaaaccataaatgaaaagaaaacagcaagaacacgaaattagttttaatgaaaattagaaaggggaaaacgaaattgttgtgaggaagatgaaa |
112 |
Q |
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|||||||||||| |||||||||||||||| ||||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40426938 |
gaaaagaaaaccgtaaatgaaaagaaaactgcaagaacaagaaattacttgtaatgaaaattagaaaggggaaaacgaaattgctgtgaggaagatgaaa |
40427037 |
T |
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| Q |
113 |
tttgtgattatgtgtttatggaagtgagaaaattccaacaaagaggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaataaga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |
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| T |
40427038 |
tttgtgattatgtgtttatggaagtgagaaaattccagcaaagaggaacaaatctaaacctcccacacccacgttgaaatgctagaaacggtaaataaga |
40427137 |
T |
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| Q |
213 |
tattcatatattcatgttttgcaaaatggtg |
243 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40427138 |
tattcatatattcatgttttgcaaaatggtg |
40427168 |
T |
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