View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_67 (Length: 241)
Name: NF1504_1D_low_67
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_67 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 43697690 - 43697888
Alignment:
| Q |
4 |
tgggattattaccaaacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaa |
103 |
Q |
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| T |
43697690 |
tgggactattaccaaacatgatattgtatttgatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaa |
43697789 |
T |
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| Q |
104 |
tttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatgatttac |
202 |
Q |
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| T |
43697790 |
tttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatgatttac |
43697888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43712610 - 43712842
Alignment:
| Q |
1 |
gtgtgggattattaccaaacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctag |
100 |
Q |
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| T |
43712610 |
gtgtgggactattacccaacatgatattgtatttgatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctag |
43712709 |
T |
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| Q |
101 |
caatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatgattt |
200 |
Q |
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| T |
43712710 |
caatttcacacctgtgattggtgcttttattgcagattcttatcttggtcgcttcttaggtgtcggaataggttcttctatcagtttcctggtatgattt |
43712809 |
T |
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| Q |
201 |
acnnnnnnnnaattccattgtgtttttcatatc |
233 |
Q |
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| T |
43712810 |
acttttttttaattccattgtgtttttcttatc |
43712842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 43726209 - 43726401
Alignment:
| Q |
4 |
tgggattattaccaaacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaa |
103 |
Q |
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||||| |||| || || |||||||||||||| |||||| ||||| ||||| |||| || | |||||||||| ||||| |||||||||||||||||||| |
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| T |
43726209 |
tgggactattgcccaatatgatattgtatttcatgggaagttacaggcttcatcttgccaaagctactcagattcttctcttatcctctgcagctagcaa |
43726308 |
T |
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| Q |
104 |
tttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatg |
196 |
Q |
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| T |
43726309 |
tttcacacctgtggttggtgcttttattgcagattcttatctcggtcggttcctcggtgttggattaggttcatttgtcagcttcctggtatg |
43726401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 43685153 - 43685329
Alignment:
| Q |
18 |
aacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtga |
117 |
Q |
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||||||||||||||||| ||||| || |||| ||||| |||| || | |||| ||||||||||| |||||||||||||| | |||||||||||| | |
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| T |
43685153 |
aacatgatattgtatttgatgggttcttacaatcttcatcttgccacagctacccagatacttctcatatcctctgcagctggaaatttcacacctcttg |
43685252 |
T |
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| Q |
118 |
ttggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggta |
194 |
Q |
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| T |
43685253 |
ttgctgcttttattgcagattcttatattggtcgattcctaggtgttggaataggttctattatcagtttcctggta |
43685329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 26223 - 26045
Alignment:
| Q |
18 |
aacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtga |
117 |
Q |
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||||||||||||||||| |||||| | |||| ||||| |||||| | ||| |||||||| || |||| ||||||| ||||| |||| |||||| |
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| T |
26223 |
aacatgatattgtatttgatgggaccttacaaccttcatcttggccaagctaaccagatactcctcttatttgctgcagccagcaagttcatgcctgtgg |
26124 |
T |
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| Q |
118 |
ttggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatg |
196 |
Q |
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| T |
26123 |
ttggtgcttttattgcagattcttatttgggtcgattcttaagtgttggattaggttctgctgtcagtttcctggtatg |
26045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 25272008 - 25272186
Alignment:
| Q |
18 |
aacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtga |
117 |
Q |
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||||||||||||||||| |||||| | |||| ||||| |||||| | ||| |||||||| || ||||| ||||||| |||| |||| |||||| |
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| T |
25272008 |
aacatgatattgtatttgatgggaccttacaaccttcatcttggccaagctaaccagatactcctcttatctgctgcagccggcaagttcatgcctgtgg |
25272107 |
T |
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| Q |
118 |
ttggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatg |
196 |
Q |
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||||||||||| |||||||||||| | ||||| ||||| || |||||||| |||||||| || |||||||||||||||| |
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| T |
25272108 |
ttggtgcttttgttgcagattcttatttgggtagattcttaagtgttggattaggttctgctgtcagtttcctggtatg |
25272186 |
T |
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