View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_74 (Length: 234)
Name: NF1504_1D_low_74
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 23696589 - 23696749
Alignment:
| Q |
20 |
acctgtggtgcatgcaaatgttgatactgaaactaacctcaaacctgttgaaggtgaatcttcttctcaattg-aaaaaatcctactgtgctatctgcat |
118 |
Q |
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| T |
23696589 |
acctgcggtgcatgcaaatgttgatactgaaactaacctcaaacctgttgaatgtgaatcttcttctcaattgaaaaaaatcctactgtgctatctgcat |
23696688 |
T |
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| Q |
119 |
ggaagctaaacctgttgaagatatgtttaaaaaccaaaactgttcacactctttctgtgaa |
179 |
Q |
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| T |
23696689 |
ggaagctaaacctgctgcagaaatgttcgaaaaccaaaactgttcacactctttctgtgaa |
23696749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 23701286 - 23701178
Alignment:
| Q |
78 |
tcttcttctcaattgaaaaaatcctactgtgctatctgcatggaagctaaacctgttgaagatatgtttaaaaaccaaaactgttcacactctttctgtg |
177 |
Q |
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||||||||||| |||||| ||||||| |||| |||||| ||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |
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| T |
23701286 |
tcttcttctcagttgaaacaatcctattgtgatatctgtatggaagctaaacctgttgaagaaatgttccaaaaccgaaaatgttcacactctttctgtg |
23701187 |
T |
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| Q |
178 |
aatattgtg |
186 |
Q |
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| T |
23701186 |
aatattgtg |
23701178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 23694517 - 23694624
Alignment:
| Q |
78 |
tcttcttctcaattgaaaaaatcctactgtgctatctgcatggaagctaaacctgttgaagatatgtttaaaaaccaaaactgttcacactctttctgtg |
177 |
Q |
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||||||||||| |||||| |||||||||||||||| || |||||||||||||| |||||||| ||||| | |||||||| |||||||| |||||||||| |
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| T |
23694517 |
tcttcttctcagttgaaacaatcctactgtgctatttgtatggaagctaaacccgttgaagaaatgttccagaaccaaaaatgttcacattctttctgtg |
23694616 |
T |
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| Q |
178 |
aatattgt |
185 |
Q |
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| T |
23694617 |
aagattgt |
23694624 |
T |
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