View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_75 (Length: 233)
Name: NF1504_1D_low_75
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 29226992 - 29227156
Alignment:
| Q |
64 |
tattactaccattagaaaaaaccaagattaaatgaatcacggttagactttataagcctgttttcattttccggctaaaaatgattggttggatttgaaa |
163 |
Q |
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| T |
29226992 |
tattattaccattagaaaaaaccaagattaaatgaatcacggttagactttataagcctgttttcattttccgggtaaaaatgattggttggatttgaaa |
29227091 |
T |
|
| Q |
164 |
tttcttgatttttacatagatgagccatatatagttaagagcaatgttatttgaacaaccttttt |
228 |
Q |
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| T |
29227092 |
tttcttgatttttacatagatgagccatatatagttaagagcaatgttatttgaacaaccttttt |
29227156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 29222989 - 29223112
Alignment:
| Q |
28 |
tatagattcaactttccaactaagaaaaataacaaatattactaccatta--gaaaaaaccaagattaaatgaatcacggttagactttataagcctgtt |
125 |
Q |
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|||||||||||||||| | |||||||||||||||||||||| |||||||| |||||||||||||| || ||||||| |||| |||||||||||||||| |
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| T |
29222989 |
tatagattcaactttcgacctaagaaaaataacaaatattattaccattaataaaaaaaccaagatt-aacgaatcactgtta-actttataagcctgtt |
29223086 |
T |
|
| Q |
126 |
ttcattttccggctaaaaatgattgg |
151 |
Q |
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|||||||| ||| ||||||||||||| |
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| T |
29223087 |
ttcatttttcgggtaaaaatgattgg |
29223112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 29226956 - 29226992
Alignment:
| Q |
5 |
ttggagtttaaaaggagggtatatatagattcaactt |
41 |
Q |
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| T |
29226956 |
ttggagtttacaaggagggtatatatagattcaactt |
29226992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 33107750 - 33107780
Alignment:
| Q |
198 |
ttaagagcaatgttatttgaacaaccttttt |
228 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
33107750 |
ttaagagcaatgttatttgaacaaccttttt |
33107780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 37316698 - 37316728
Alignment:
| Q |
198 |
ttaagagcaatgttatttgaacaaccttttt |
228 |
Q |
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| T |
37316698 |
ttaagagcaatgttatttgaacaaccttttt |
37316728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 11965979 - 11965951
Alignment:
| Q |
200 |
aagagcaatgttatttgaacaaccttttt |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11965979 |
aagagcaatgttatttgaacaaccttttt |
11965951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 15325525 - 15325553
Alignment:
| Q |
200 |
aagagcaatgttatttgaacaaccttttt |
228 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
15325525 |
aagagcaatgttatttgaacaaccttttt |
15325553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 33712506 - 33712478
Alignment:
| Q |
200 |
aagagcaatgttatttgaacaaccttttt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
33712506 |
aagagcaatgttatttgaacaaccttttt |
33712478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 40439725 - 40439753
Alignment:
| Q |
200 |
aagagcaatgttatttgaacaaccttttt |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40439725 |
aagagcaatgttatttgaacaaccttttt |
40439753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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