View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504_1D_low_8 (Length: 432)
Name: NF1504_1D_low_8
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_8 |
 | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 27648760 - 27648425
Alignment:
| Q |
7 |
tagattatactattgtctcattagaaacttgtcttgatttgttattgcagtcaattaccattaaatctttggaagcacttcagtatttacataaccttgg |
106 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
27648760 |
tagattctactactgtctcattagaaacttgtcttgatttgttattgcaatcaattaccattcaatgtttggaagcacttcagtacttacataaccttgg |
27648661 |
T |
|
| Q |
107 |
actaatacattgttacttgaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattcatcttggaggtagttgttttgagaca |
206 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
27648660 |
actaacacattgcgacttgaagccggagaatattttggttaaaagctacgaccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagaca |
27648561 |
T |
|
| Q |
207 |
gatcacctttgctcatatgttcagtccaggtcctatcgtgctcctgagcttattctcgggatttcatatgacaagaagattgatatctggtcccttggat |
306 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27648560 |
gatcacctttgctcatatgttcagtcgaggtcctatcgtgctcctgaggttattctcgggctttcatatgacaagaagattgatatctggtcccttggat |
27648461 |
T |
|
| Q |
307 |
gcatctttggcagaactttgtactggcaatgtaagta |
343 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
27648460 |
gcatc-ttggcagaactttgtaccggcaatgtaagta |
27648425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 25 - 343
Target Start/End: Complemental strand, 27708927 - 27708610
Alignment:
| Q |
25 |
cattagaaacttgtcttgatttgttattgcagtcaattaccattaaatctttggaagcacttcagtatttacataaccttggactaatacattgttactt |
124 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27708927 |
cattataaacttgtcttgatttgtttttgcagtcaattaccattcaatgtttggaagcacttcagtatttacataaccttggactaatacattgtgactt |
27708828 |
T |
|
| Q |
125 |
gaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattcatcttggaggtagttgttttgagacagatcacctttgctcatat |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27708827 |
gaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagacagatcacctttgctcatat |
27708728 |
T |
|
| Q |
225 |
gttcagtccaggtcctatcgtgctcctgagcttattctcgggatttcatatgacaagaagattgatatctggtcccttggatgcatctttggcagaactt |
324 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27708727 |
gttcagtctaggtcctatagtgctcccgaggttattctcgggctttcatacgacaagaagattgatatctggtcccttggatgcatc-ttggcagaactt |
27708629 |
T |
|
| Q |
325 |
tgtactggcaatgtaagta |
343 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27708628 |
tgtactggcaatgtaagta |
27708610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 25 - 343
Target Start/End: Complemental strand, 27728753 - 27728436
Alignment:
| Q |
25 |
cattagaaacttgtcttgatttgttattgcagtcaattaccattaaatctttggaagcacttcagtatttacataaccttggactaatacattgttactt |
124 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27728753 |
cattataaacttgtcttgatttgtttttgcagtcaattaccattcaatgtttggaagcacttcagtatttacataaccttggactaatacattgtgactt |
27728654 |
T |
|
| Q |
125 |
gaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattcatcttggaggtagttgttttgagacagatcacctttgctcatat |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27728653 |
gaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagacagatcacctttgctcatat |
27728554 |
T |
|
| Q |
225 |
gttcagtccaggtcctatcgtgctcctgagcttattctcgggatttcatatgacaagaagattgatatctggtcccttggatgcatctttggcagaactt |
324 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27728553 |
gttcagtctaggtcctatagtgctcccgaggttattctcgggctttcatacgacaagaagattgatatctggtcccttggatgcatc-ttggcagaactt |
27728455 |
T |
|
| Q |
325 |
tgtactggcaatgtaagta |
343 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27728454 |
tgtactggcaatgtaagta |
27728436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 27597799 - 27597646
Alignment:
| Q |
47 |
gttattgcagtcaattaccattaaatctttggaagcacttcagtatttacataaccttggactaatacattgttacttgaagccggagaatattttggtt |
146 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27597799 |
gttattgcagtcaattaccattcaatattaggaagcacttcagtatttacataaccttggactaatacattgtgacttgaagccggagaatattttggtt |
27597700 |
T |
|
| Q |
147 |
aaaagctacagccgatgtgaggtgaaggtcattcatcttggaggtagttgtttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
27597699 |
aaaagctacagccgatgtgaggtgaaggtcattgatcttggaagtagttgtttt |
27597646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 25 - 343
Target Start/End: Complemental strand, 7332 - 7015
Alignment:
| Q |
25 |
cattagaaacttgtcttgatttgttattgcagtcaattaccattaaatctttggaagcacttcagtatttacataaccttggactaatacattgttactt |
124 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7332 |
cattataaacttgtcttgatttgtttttgcagtcaattaccattcaatgtttggaagcacttcagtatttacataaccttggactaatacattgtgactt |
7233 |
T |
|
| Q |
125 |
gaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattcatcttggaggtagttgttttgagacagatcacctttgctcatat |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7232 |
gaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagacagatcacctttgctcatat |
7133 |
T |
|
| Q |
225 |
gttcagtccaggtcctatcgtgctcctgagcttattctcgggatttcatatgacaagaagattgatatctggtcccttggatgcatctttggcagaactt |
324 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7132 |
gttcagtctaggtcctattgtgctcccgaggttattctcgggctttcatacgacaagaagattgatatctggtcccttggatgcatc-ttggcagaactt |
7034 |
T |
|
| Q |
325 |
tgtactggcaatgtaagta |
343 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7033 |
tgtactggcaatgtaagta |
7015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University