View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_80 (Length: 227)

Name: NF1504_1D_low_80
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_80
NF1504_1D_low_80
[»] chr6 (14 HSPs)
chr6 (1-222)||(30960638-30960859)
chr6 (6-222)||(31224143-31224359)
chr6 (7-222)||(31201598-31201813)
chr6 (1-222)||(30944633-30944854)
chr6 (6-222)||(31189790-31190006)
chr6 (1-222)||(31145727-31145948)
chr6 (6-210)||(30985968-30986172)
chr6 (6-210)||(30992132-30992336)
chr6 (1-222)||(31172040-31172261)
chr6 (1-219)||(30954896-30955114)
chr6 (6-148)||(31131518-31131660)
chr6 (1-181)||(31213915-31214095)
chr6 (6-153)||(31229493-31229640)
chr6 (1-48)||(15926910-15926957)
[»] chr1 (3 HSPs)
chr1 (1-48)||(9254742-9254789)
chr1 (1-48)||(9320251-9320298)
chr1 (1-48)||(9350568-9350615)
[»] chr8 (1 HSPs)
chr8 (11-99)||(44035408-44035496)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30960859 - 30960638
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30960859 aatatatttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgt 30960760  T
Q  101 gaggttctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  30960759 gaggttctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcactgccacatgacaaccattcaataact 30960660  T
Q  201 ttcctttgtagacaacaccaaa 222  Q
    ||||||||||||||||||||||    
T  30960659 ttcctttgtagacaacaccaaa 30960638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 31224359 - 31224143
Alignment:
Q  6 atttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggt 105  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||    
T  31224359 atttgtcaagagaaccatttgacataaattcatatacgagagcttttttgttgccttcaaaacaaaatccaagaagggtgacaacattaacatgagaggt 31224260  T
Q  106 tctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataactttcct 205  Q
    ||||| ||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| |||||||| |||||| |||||||||| ||||||||||||    
T  31224259 tctagaaatactagcaacctcattaataaattcctcaccatttccttttgatacattcaatatcttcactgccacaagacaaccattaaataactttcct 31224160  T
Q  206 ttgtagacaacaccaaa 222  Q
    ||||| |||||||||||    
T  31224159 ttgtacacaacaccaaa 31224143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 31201598 - 31201813
Alignment:
Q  7 tttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggtt 106  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201598 tttgtcaagagaaccattggacataaattcatatatgagtgctttttttgtgccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggtt 31201697  T
Q  107 ctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataactttcctt 206  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||| ||||| | |||  | || |||||||| |||||||||||||    
T  31201698 ctagtaatactagcaacctcattaataaattcttcaccatttcctttggatgaattcaatatctttatcgcagcgtggcaaccattgaataactttcctt 31201797  T
Q  207 tgtagacaacaccaaa 222  Q
    |||| |||||||||||    
T  31201798 tgtacacaacaccaaa 31201813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30944854 - 30944633
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgt 100  Q
    |||| |||||||||| |||||||| ||||||||||||||||| |||||||| ||||  |||||||||||||||||||||||||| |||||||||||||||    
T  30944854 aataaatttgtcaagggaaccattagacataaattcatatacgagagctttattacaaccttcaaaacaaaatccaagaagggtaacaacattaacatgt 30944755  T
Q  101 gaggttctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataact 200  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||  ||||||| |||||||||||||||||||| || ||| || ||||||| |||||||    
T  30944754 gaggttctagtaatactagtaacctcattaataaagtcttcaccaattcctttcgatgcattcaaaatcttcactgctacaagagaaccattgaataact 30944655  T
Q  201 ttcctttgtagacaacaccaaa 222  Q
    |||||||||| ||| |||||||    
T  30944654 ttcctttgtacacagcaccaaa 30944633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 31189790 - 31190006
Alignment:
Q  6 atttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggt 105  Q
    ||||||||||||||||||| |||||||||||||||| ||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31189790 atttgtcaagagaaccatttgacataaattcatatataagtgctttttttttgccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggt 31189889  T
Q  106 tctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataactttcct 205  Q
    |||||||||||||| ||| || |||||||||||||||||||||||||| |||| |||||| ||||| |  || |||| ||||||||| | ||||||||||    
T  31189890 tctagtaatactagaaacttcattaataaattcttcaccgtttcctttggatgaattcaatatctttatagcaacatcacaaccattgagtaactttcct 31189989  T
Q  206 ttgtagacaacaccaaa 222  Q
    ||||| |||||||||||    
T  31189990 ttgtacacaacaccaaa 31190006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31145727 - 31145948
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgt 100  Q
    |||| |||||||||| |||||||||||||||||||||||||  || ||||||||   ||||||||||||||||||||||||||| ||||| |||||||||    
T  31145727 aataaatttgtcaagtgaaccattggacataaattcatatatgagtgctttttttgtgccttcaaaacaaaatccaagaagggtaacaacgttaacatgt 31145826  T
Q  101 gaggttctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataact 200  Q
    ||||||||||||||||| | |||||| |||||||||||||||||||||||||| |||| |||||| ||||| |  || |||||||||||||| |||||||    
T  31145827 gaggttctagtaatactggaaacctcattaataaattcttcaccgtttcctttggatgaattcaatatctttatagcgacatgacaaccattgaataact 31145926  T
Q  201 ttcctttgtagacaacaccaaa 222  Q
    |||||||||| |||||||||||    
T  31145927 ttcctttgtacacaacaccaaa 31145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 30986172 - 30985968
Alignment:
Q  6 atttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggt 105  Q
    |||||||||| |||||||| ||||||||||||||||  |||||||| ||||  |||||||||||||||||||||||| | ||||||||||||||||||||    
T  30986172 atttgtcaagggaaccattagacataaattcatatatgagagctttattacaaccttcaaaacaaaatccaagaaggttaacaacattaacatgtgaggt 30986073  T
Q  106 tctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataactttcct 205  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| || |||||||| || ||| || ||||||| ||||||||||||    
T  30986072 tctagtaatactagcaacctcattaataaagtcttcaccatttccttttgatgcatttaatatcttcactgctacaagagaaccattgaataactttcct 30985973  T
Q  206 ttgta 210  Q
    |||||    
T  30985972 ttgta 30985968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 30992336 - 30992132
Alignment:
Q  6 atttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggt 105  Q
    |||||||||| |||||||| ||||||||||||||||  |||||||| ||||  |||||||||||||||||||||||| | ||||||||||||||||||||    
T  30992336 atttgtcaagggaaccattagacataaattcatatatgagagctttattacaaccttcaaaacaaaatccaagaaggttaacaacattaacatgtgaggt 30992237  T
Q  106 tctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataactttcct 205  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| || |||||||| || ||| || ||||||| ||||||||||||    
T  30992236 tctagtaatactagcaacctcattaataaagtcttcaccatttccttttgatgcatttaatatcttcactgctacaagagaaccattgaataactttcct 30992137  T
Q  206 ttgta 210  Q
    |||||    
T  30992136 ttgta 30992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31172040 - 31172261
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgt 100  Q
    |||| ||||||||||||||||||| ||||||||||| ||||  || ||||||||   ||||||||||||||||||||||||||| ||||| |||||||||    
T  31172040 aataaatttgtcaagagaaccatttgacataaattcgtatatgagtgctttttttgtgccttcaaaacaaaatccaagaagggtaacaacgttaacatgt 31172139  T
Q  101 gaggttctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataact 200  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||| |||||| ||||| |  || || ||||||||||| |||||||    
T  31172140 gaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttggatggattcaatatctttatagcaacgtgacaaccattgaataact 31172239  T
Q  201 ttcctttgtagacaacaccaaa 222  Q
    |||||||||| |||||||||||    
T  31172240 ttcctttgtacacaacaccaaa 31172261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 30955114 - 30954896
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgt 100  Q
    |||| |||||||||| |||||||| ||||||||||||||||  |||||||| || |  |||||||||||||||||||||||||| |||||||||||||||    
T  30955114 aataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaacattaacatgt 30955015  T
Q  101 gaggttctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccacatgacaaccatttaataact 200  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |  |||||||| |||||| |  ||||||| | || ||    
T  30955014 gaggttctagtaatactagtaacctcattaataaattcttcaccatttccttttgatgcatttagcatcttcactgccacaagggaaccattcactagct 30954915  T
Q  201 ttcctttgtagacaacacc 219  Q
    |||||||||| ||| ||||    
T  30954914 ttcctttgtacacagcacc 30954896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 31131518 - 31131660
Alignment:
Q  6 atttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggt 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||  |||||||||||||||||||||||| ||||||||| |||||    
T  31131518 atttgtcaagagaaccattagacataaattcatatacaagagcttttttggtgccttcgtaacaaaatccaagaagggtgacaatattaacatgcgaggt 31131617  T
Q  106 tctagtaatactagcaacctcgttaataaattcttcaccgttt 148  Q
    ||||| ||||||||||||||| |||||||||||||||||||||    
T  31131618 tctagaaatactagcaacctcattaataaattcttcaccgttt 31131660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 31214095 - 31213915
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgt 100  Q
    |||| |||||||||| |||||||| ||||| |||||||| |  || |||||||| || || ||||||||||||||||||||||  ||||||||||| ||     
T  31214095 aataaatttgtcaagcgaaccattagacatgaattcatagatcagggcttttttgcgaccgtcaaaacaaaatccaagaagggcaacaacattaacgtga 31213996  T
Q  101 gaggttctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatcttcaccgccaca 181  Q
    |||||| | || || |||| ||||||||| |||||||||||||| |||||||| ||||| || || |||||||| ||||||    
T  31213995 gaggtttttgttatgctagaaacctcgttcataaattcttcaccttttcctttggatgcgtttaatatcttcacggccaca 31213915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 153
Target Start/End: Complemental strand, 31229640 - 31229493
Alignment:
Q  6 atttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggt 105  Q
    |||| ||||| |||||||| ||||| |||||||| |  ||||||||||| || ||||||||||||||||||||||||| || ||||||||| || |||||    
T  31229640 atttttcaagggaaccattcgacattaattcataaatgagagcttttttccgtccttcaaaacaaaatccaagaagggcgaaaacattaacgtgagaggt 31229541  T
Q  106 tctagtaatactagcaacctcgttaataaattcttcaccgtttccttt 153  Q
    | ||||||| |||| |||||| || |||||||| ||||| ||||||||    
T  31229540 tttagtaatgctagaaacctcattcataaattcatcaccatttccttt 31229493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15926957 - 15926910
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagc 48  Q
    ||||||||| |||||||||||||||| ||| |||||||| ||||||||    
T  15926957 aatatatttatcaagagaaccattgggcatgaattcataaacaagagc 15926910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9254789 - 9254742
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagc 48  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||||||    
T  9254789 aatatatttatcaagagaaccattggacatgaattcataaacaagagc 9254742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9320251 - 9320298
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagc 48  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||    
T  9320251 aatatatttatcaagagagccattggacatgaattcataaacaagagc 9320298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9350568 - 9350615
Alignment:
Q  1 aatatatttgtcaagagaaccattggacataaattcatatacaagagc 48  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||    
T  9350568 aatatatttatcaagagagccattggacatgaattcataaacaagagc 9350615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 44035496 - 44035408
Alignment:
Q  11 tcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatg 99  Q
    ||||| ||||||||||||||||| ||||| |  |||||||||||    || |||| ||||||||| | ||| |||||||||||||||||    
T  44035496 tcaagtgaaccattggacataaactcatagatgagagcttttttggttccatcaagacaaaatcctaaaagagtgacaacattaacatg 44035408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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