View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_82 (Length: 226)

Name: NF1504_1D_low_82
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_82
NF1504_1D_low_82
[»] chr7 (13 HSPs)
chr7 (20-205)||(6106250-6106435)
chr7 (1-205)||(6180613-6180820)
chr7 (1-205)||(6247434-6247641)
chr7 (63-205)||(6234679-6234821)
chr7 (63-205)||(6213112-6213254)
chr7 (63-205)||(6208261-6208403)
chr7 (63-205)||(6237560-6237702)
chr7 (20-205)||(6094449-6094631)
chr7 (96-205)||(6089155-6089264)
chr7 (97-205)||(6101039-6101147)
chr7 (4-52)||(6208163-6208211)
chr7 (20-52)||(6234597-6234629)
chr7 (4-52)||(6237456-6237504)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 6106250 - 6106435
Alignment:
Q  20 tccgagttttagcataaacaactcccaaccttcccatgtgccgagaggatacatttgtagtatagcatatggctggcaatccatctggtgacatacatgt 119  Q
    ||||||||||||||||||||||||||| ||||| |||| || ||||||| | ||||||| |||||||||||| ||||||| |||||||| ||||||||||    
T  6106250 tccgagttttagcataaacaactcccacccttcacatgcgctgagaggaaagatttgtattatagcatatgggtggcaattcatctggtcacatacatgt 6106349  T
Q  120 ttcaaacgagttgtcaaaatcactttaatgccattcacttttggttgaattcccaccttctgcaaatcaatatatttccaaacatc 205  Q
    |||||||| ||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  6106350 ttcaaacgtgttgttagaatcactttaatgccattcacttttggatgaattcctaccttctgcaaatcaatatatttccaaacatc 6106435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 6180613 - 6180820
Alignment:
Q  1 tcttaggtgtttcgtcaactccgagttttagcataaacaactcccaaccttcccatgtgccg---agaggatacatttgtagtatagcatatggctggca 97  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||| |||      ||||    |||||||  ||||||||||||||| ||||||||||    
T  6180613 tcttaggtgttccatcatgtccgagttttagcataaacaactcccaatctttattgttgccattaagaggatctatttgtagtatagcacatggctggca 6180712  T
Q  98 atccatctggtgacatacatgtttcaaacgagttgtcaaaatcactttaatgccattcacttttggttgaattcccaccttctgcaaatcaatatatttc 197  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  6180713 atccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcccaccttcttcaaatcaatatatttc 6180812  T
Q  198 caaacatc 205  Q
    ||||||||    
T  6180813 caaacatc 6180820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 6247434 - 6247641
Alignment:
Q  1 tcttaggtgtttcgtcaactccgagttttagcataaacaactcccaaccttcccatgtgccg---agaggatacatttgtagtatagcatatggctggca 97  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||| |||      ||||    |||||||  ||||||||||||||| ||||||||||    
T  6247434 tcttaggtgttccatcatgtccgagttttagcataaacaactcccaatctttattgttgccattaagaggatctatttgtagtatagcacatggctggca 6247533  T
Q  98 atccatctggtgacatacatgtttcaaacgagttgtcaaaatcactttaatgccattcacttttggttgaattcccaccttctgcaaatcaatatatttc 197  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  6247534 atccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcccaccttcttcaaatcaatatatttc 6247633  T
Q  198 caaacatc 205  Q
    ||||||||    
T  6247634 caaacatc 6247641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 6234679 - 6234821
Alignment:
Q  63 agaggatacatttgtagtatagcatatggctggcaatccatctggtgacatacatgtttcaaacgagttgtcaaaatcactttaatgccattcacttttg 162  Q
    |||||| ||||||||| |||| ||| || ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6234679 agaggaaacatttgtattatatcatttgtctgacaatccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttg 6234778  T
Q  163 gttgaattcccaccttctgcaaatcaatatatttccaaacatc 205  Q
    | |||||||||||||||||||||||||||||||||||||||||    
T  6234779 gatgaattcccaccttctgcaaatcaatatatttccaaacatc 6234821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 6213112 - 6213254
Alignment:
Q  63 agaggatacatttgtagtatagcatatggctggcaatccatctggtgacatacatgtttcaaacgagttgtcaaaatcactttaatgccattcacttttg 162  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| ||    
T  6213112 agaggaaacatttgtattatagcatatgggtggcaatccatctggtaacatacatgttccaaacgagttgtcaaaatcactttaatgccatttacttctg 6213211  T
Q  163 gttgaattcccaccttctgcaaatcaatatatttccaaacatc 205  Q
    | |||||||||| ||||||||||||||||||||||||||||||    
T  6213212 gatgaattcccaacttctgcaaatcaatatatttccaaacatc 6213254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 6208261 - 6208403
Alignment:
Q  63 agaggatacatttgtagtatagcatatggctggcaatccatctggtgacatacatgtttcaaacgagttgtcaaaatcactttaatgccattcacttttg 162  Q
    |||||| ||||||||| |||| ||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  6208261 agaggaaacatttgtattatatcatttgtctgacaatccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttt 6208360  T
Q  163 gttgaattcccaccttctgcaaatcaatatatttccaaacatc 205  Q
    | ||||||||||||||||||||||||||||| |||||||||||    
T  6208361 gatgaattcccaccttctgcaaatcaatataattccaaacatc 6208403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 6237560 - 6237702
Alignment:
Q  63 agaggatacatttgtagtatagcatatggctggcaatccatctggtgacatacatgtttcaaacgagttgtcaaaatcactttaatgccattcacttttg 162  Q
    |||||| ||||||||| |||| ||| ||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  6237560 agaggaaacatttgtattataccatttgtttgacaatccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttt 6237659  T
Q  163 gttgaattcccaccttctgcaaatcaatatatttccaaacatc 205  Q
    | ||||||||||||||||||||||||||||| |||||||||||    
T  6237660 gatgaattcccaccttctgcaaatcaatataattccaaacatc 6237702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 6094449 - 6094631
Alignment:
Q  20 tccgagttttagcataaacaactcccaaccttcccatgtgccgagaggatacatttgtagtatagcatatggctggcaatccatctggtgacatacatgt 119  Q
    |||||||||||||||||||||||||||| ||||  ||| |  ||||||   ||||||||  |||  || ||||   |||||||||| |||||| ||||||    
T  6094449 tccgagttttagcataaacaactcccaatcttc--atg-gtagagaggtagcatttgtatcatatgatctggcatacaatccatctcgtgacacacatgt 6094545  T
Q  120 ttcaaacgagttgtcaaaatcactttaatgccattcacttttggttgaattcccaccttctgcaaatcaatatatttccaaacatc 205  Q
    |||||||||||||| | ||||||||||||  ||||||| ||| |  ||||||||||||| ||||||||||| ||||||||||||||    
T  6094546 ttcaaacgagttgttagaatcactttaattacattcacatttagaggaattcccaccttttgcaaatcaatgtatttccaaacatc 6094631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 6089155 - 6089264
Alignment:
Q  96 caatccatctggtgacatacatgtttcaaacgagttgtcaaaatcactttaatgccattcacttttggttgaattcccaccttctgcaaatcaatatatt 195  Q
    ||||||||||| ||||| ||| |||||||||||||||||| ||| |||||||| |||||||| ||||  |||||||||||||| | ||||||||| ||||    
T  6089155 caatccatctgttgacacacaagtttcaaacgagttgtcagaattactttaataccattcacctttgtatgaattcccaccttttccaaatcaatgtatt 6089254  T
Q  196 tccaaacatc 205  Q
    ||||||||||    
T  6089255 tccaaacatc 6089264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 6101039 - 6101147
Alignment:
Q  97 aatccatctggtgacatacatgtttcaaacgagttgtcaaaatcactttaatgccattcacttttggttgaattcccaccttctgcaaatcaatatattt 196  Q
    ||||||| || ||||| || ||||||||||||||||||| ||| | |||||||||||||  | |||| ||||||||  | ||||| ||||| || ||  |    
T  6101039 aatccatttgttgacacacgtgtttcaaacgagttgtcagaatgagtttaatgccattcgttcttggctgaattccagctttctgaaaatcgatgtacct 6101138  T
Q  197 ccaaacatc 205  Q
    |||||||||    
T  6101139 ccaaacatc 6101147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 6208163 - 6208211
Alignment:
Q  4 taggtgtttcgtcaactccgagttttagcataaacaactcccaaccttc 52  Q
    |||||||||| |||  ||| |||||||||||||||||||||||||||||    
T  6208163 taggtgtttcatcatgtccaagttttagcataaacaactcccaaccttc 6208211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 6234597 - 6234629
Alignment:
Q  20 tccgagttttagcataaacaactcccaaccttc 52  Q
    |||||||||||||||||||||||||||||||||    
T  6234597 tccgagttttagcataaacaactcccaaccttc 6234629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 6237456 - 6237504
Alignment:
Q  4 taggtgtttcgtcaactccgagttttagcataaacaactcccaaccttc 52  Q
    |||||||||| |||  ||| |||||||||||||||||||||||| ||||    
T  6237456 taggtgtttcatcatgtccaagttttagcataaacaactcccaatcttc 6237504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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