View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_1D_low_87 (Length: 219)

Name: NF1504_1D_low_87
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_1D_low_87
NF1504_1D_low_87
[»] chr5 (3 HSPs)
chr5 (4-214)||(38064084-38064294)
chr5 (88-158)||(39149449-39149519)
chr5 (85-155)||(27645836-27645906)
[»] chr7 (4 HSPs)
chr7 (4-157)||(8466434-8466587)
chr7 (88-156)||(85067-85135)
chr7 (87-156)||(9124375-9124444)
chr7 (120-160)||(12138155-12138195)
[»] chr4 (2 HSPs)
chr4 (84-156)||(50656957-50657029)
chr4 (84-156)||(5929939-5930011)
[»] chr3 (3 HSPs)
chr3 (85-156)||(42423204-42423275)
chr3 (107-156)||(41040571-41040620)
chr3 (85-126)||(52398353-52398394)
[»] chr1 (2 HSPs)
chr1 (84-126)||(27418193-27418235)
chr1 (87-156)||(42843885-42843954)
[»] chr8 (1 HSPs)
chr8 (87-156)||(2601210-2601279)
[»] chr2 (1 HSPs)
chr2 (84-156)||(16043374-16043445)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 38064294 - 38064084
Alignment:
Q  4 tggtgttggaggtgggaaggagagaagggatgtggaaggtgttaaataaattatccaatgttgagtgtttatgttaacaccatttaatctaatggttaaa 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38064294 tggtgctggaggtgggaaggagagaagggatgtggaaggtgttaaagaaattatccaatgttgagtgtctatgttaacaccatttaatctaatggttaaa 38064195  T
Q  104 agtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccaccaaatatgaaaccatttatcttaagattagtgctcttatatgttattg 203  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38064194 agtaactttcccatggtgggaaagttttcacccttcccatgtgaaatgccaccaaatatgaaaccatttatcttaaaattagtgctcttatatgttattg 38064095  T
Q  204 aggcatgacgt 214  Q
    |||||||||||    
T  38064094 aggcatgacgt 38064084  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 39149449 - 39149519
Alignment:
Q  88 taatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccaccaa 158  Q
    |||||||||||| ||||  ||||||  |||||||||||||  |||||| ||| ||||||||||||||||||    
T  39149449 taatctaatggtaaaaaaaaactttcccatggtgggaaaggattcacctttcccatgtgaaatgccaccaa 39149519  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 27645906 - 27645836
Alignment:
Q  85 atttaatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccac 155  Q
    |||| |||||| ||| ||||  ||||||||||||||||||| |||||   ||||| |||||||||||||||    
T  27645906 attttatctaaaggtcaaaacaaactttttcatggtgggaaggttttacaccttcccatgtgaaatgccac 27645836  T

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Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 8466434 - 8466587
Alignment:
Q  4 tggtgttggaggtgggaaggagagaagggatgtggaaggtgttaaataaattatccaatgttgagtgtttatgttaacaccatttaatctaatggttaaa 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8466434 tggtgctggaggtgggaaggagagaagggatgtggaaggtgttaaagaaattatccaatgttgagtgtctatgttaacaccatttaatctaatggttaaa 8466533  T
Q  104 agtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacca 157  Q
    |||||||||  |||||||| |||||||||||||||| |||||||||||||||||    
T  8466534 agtaactttcccatggtggaaaagttttcacccttcccatgtgaaatgccacca 8466587  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 85067 - 85135
Alignment:
Q  88 taatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacc 156  Q
    |||||||||||| ||||  ||||||| |||||||||||||  |||||| ||| ||||||||||||||||    
T  85067 taatctaatggtaaaaaaaaacttttccatggtgggaaaggattcacctttcccatgtgaaatgccacc 85135  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 9124375 - 9124444
Alignment:
Q  87 ttaatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacc 156  Q
    ||||||||||||||||||| |  |||  ||||||||||| ||||||||| ||| ||||||||||| ||||    
T  9124375 ttaatctaatggttaaaagcatttttcccatggtgggaaggttttcacctttcccatgtgaaatggcacc 9124444  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 12138195 - 12138155
Alignment:
Q  120 tgggaaagttttcacccttctcatgtgaaatgccaccaaat 160  Q
    ||||||||||||| || ||| ||||||||||||||||||||    
T  12138195 tgggaaagttttctcctttcccatgtgaaatgccaccaaat 12138155  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 50657029 - 50656957
Alignment:
Q  84 catttaatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacc 156  Q
    |||||||||| |||||||||| |||||||| |||||||||||  ||||||    ||||||||||||| |||||    
T  50657029 catttaatctgatggttaaaaataacttttccatggtgggaagattttcaagtgtctcatgtgaaataccacc 50656957  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 5929939 - 5930011
Alignment:
Q  84 catttaatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacc 156  Q
    ||||| |||| ||||||||||| |  |||||||||||| |||  |||||||  ||| ||||||||||||||||    
T  5929939 catttcatcttatggttaaaagcacttttttcatggtgagaagattttcacatttcccatgtgaaatgccacc 5930011  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 42423204 - 42423275
Alignment:
Q  85 atttaatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacc 156  Q
    ||||||||| |||||||||| |||||||  |||||||||||  ||||||    |||||||||||||||||||    
T  42423204 atttaatctgatggttaaaaataactttcccatggtgggaagattttcaagtgtctcatgtgaaatgccacc 42423275  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 41040620 - 41040571
Alignment:
Q  107 aactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacc 156  Q
    ||||||||||||||| |||||  |||||| ||| ||||||||||||||||    
T  41040620 aactttttcatggtgagaaaggattcacctttcccatgtgaaatgccacc 41040571  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 52398394 - 52398353
Alignment:
Q  85 atttaatctaatggttaaaagtaactttttcatggtgggaaa 126  Q
    |||||||||||||||||||| | |||||| ||||||||||||    
T  52398394 atttaatctaatggttaaaatttacttttccatggtgggaaa 52398353  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 27418235 - 27418193
Alignment:
Q  84 catttaatctaatggttaaaagtaactttttcatggtgggaaa 126  Q
    ||||| ||||||||||||||| | |||||||||||||||||||    
T  27418235 catttgatctaatggttaaaaattactttttcatggtgggaaa 27418193  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 42843954 - 42843885
Alignment:
Q  87 ttaatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacc 156  Q
    ||||||||||||||||||| |  |||   |||||||||| ||||||||| ||| ||||||||||| ||||    
T  42843954 ttaatctaatggttaaaagcatttttcctatggtgggaaggttttcacctttcccatgtgaaatggcacc 42843885  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 2601210 - 2601279
Alignment:
Q  87 ttaatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacc 156  Q
    ||||||||||||||||||  |  ||||  |||||||||||||||||||  ||| ||||||||||| ||||    
T  2601210 ttaatctaatggttaaaaacattttttctatggtgggaaagttttcacttttcccatgtgaaatgtcacc 2601279  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 16043445 - 16043374
Alignment:
Q  84 catttaatctaatggttaaaagtaactttttcatggtgggaaagttttcacccttctcatgtgaaatgccacc 156  Q
    ||||| |||||||||| ||||  ||||||| ||||||||||||| |||   ||||| ||||||||||||||||    
T  16043445 catttgatctaatggtcaaaaa-aacttttccatggtgggaaagctttataccttcccatgtgaaatgccacc 16043374  T

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