View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_88 (Length: 218)
Name: NF1504_1D_low_88
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_88 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 18078722 - 18078896
Alignment:
| Q |
24 |
agcatagacagttagggttcacctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactca |
123 |
Q |
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| T |
18078722 |
agcatagacaattacggttcacctacatttgaaatttcaatggcggaggacgagaacagcgtcatagtcacatatacagtaaaaatcaaagtcagactca |
18078821 |
T |
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| Q |
124 |
cagtcccggacctaaacgaactcattcctgatcatgatcatcgatggagacggtaccgttggagggtgatgacgt |
198 |
Q |
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| T |
18078822 |
cagtcccggacctagacgaacccattcctgatcatgatcatcgatggagacggtaccgttggagggtgatgacgt |
18078896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 18076810 - 18076913
Alignment:
| Q |
27 |
atagacagttagggttcacctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacag |
126 |
Q |
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| T |
18076810 |
atagatagttagggttaacctgcatttcaaatttctatggcgggagaagagaaccaccacatagtcacatatatagtgaaaatcaaagtcacactcacgg |
18076909 |
T |
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| Q |
127 |
tccc |
130 |
Q |
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|||| |
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| T |
18076910 |
tccc |
18076913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 51478301 - 51478443
Alignment:
| Q |
25 |
gcatagacagttagggttcacctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcac |
124 |
Q |
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| T |
51478301 |
gcatagatagttagggctcacctgcatttgaaatttcaatggctgaggaagagaacaatgacatagtcacgtatatagtgaaaatcaaagtcatactcac |
51478400 |
T |
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| Q |
125 |
agtcccggacctaaacgaactcattcctgatcatgatcatcga |
167 |
Q |
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| T |
51478401 |
cgtcccggacccagatgaacccattcctgatcatgatcatcga |
51478443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 51454143 - 51454259
Alignment:
| Q |
49 |
catttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtcccggacctaaacgaactcat |
148 |
Q |
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|||| |||||||||||||||||||||||||||||| || || ||| |||| ||| |||||||||||||||||||| |||| || | | |||| ||| |
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| T |
51454143 |
cattcgaaatttcaatggcggaggaagagaacaaccacacagtcacttatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccat |
51454242 |
T |
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| Q |
149 |
tcctgatcatgatcatc |
165 |
Q |
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| T |
51454243 |
tcctgatcatgatcatc |
51454259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 42431704 - 42431626
Alignment:
| Q |
45 |
cctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactca |
123 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||| | |||||||| || ||||||||||||||||||| |
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| T |
42431704 |
cctacattagaaatttcaatggcggaggaagagaacaacgacattgccacatatattgtgaaaatcaaagtcacactca |
42431626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 42433368 - 42433456
Alignment:
| Q |
49 |
catttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtcccggaccta |
137 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| | ||||||| || ||||||||||||| |||| ||||| |||||| |
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| T |
42433368 |
catttgaaatttcaatggcggaggaagagaacaacgacattgtcacatatgttgtgcaaatcaaagtcaccctcattgtcccagaccta |
42433456 |
T |
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