View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_92 (Length: 216)
Name: NF1504_1D_low_92
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_92 |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 33368353 - 33368155
Alignment:
| Q |
10 |
agaagaaacaactacatgatttgagatctgcctaaaccgtagtccaaagggttatacacccctcttgttcataagcaaaagaaaatagcaaaccactata |
109 |
Q |
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| T |
33368353 |
agaagaaacaactacatgatttgagatctgcctaaaccgtagtccaaagggttatacacccctcttgttcataagcaaaagaaaatagcaaaccactata |
33368254 |
T |
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| Q |
110 |
taaccaaaaccagcaatgttgcaatcaggacgttcacttggtaaaccgattctagtactaacaaagctcacatgaagcaacaagcaaagttaataactt |
208 |
Q |
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| T |
33368253 |
taaccaaaaccagcaatgttgcaatcaggacgtttacttggtaaaccgattctagtactaacaaagctcgcatgaagcaacaagcaaagttaataactt |
33368155 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 33360647 - 33360606
Alignment:
| Q |
151 |
taaaccgattctagtactaacaaagctcacatgaagcaacaa |
192 |
Q |
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| T |
33360647 |
taaacagattctagtactaacaaagctcatatgcagcaacaa |
33360606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 14521 - 14607
Alignment:
| Q |
106 |
tatataaccaaaaccagcaatgttgcaatcaggacgttcacttggtaaaccgattctagtactaacaaagctcacatgaagcaacaa |
192 |
Q |
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| T |
14521 |
tatataaccaaaactagcaatgttgcaatcaggacatactattggtagacctattctggtactaacaaagctcacatgaagcaacaa |
14607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 41430362 - 41430276
Alignment:
| Q |
106 |
tatataaccaaaaccagcaatgttgcaatcaggacgttcacttggtaaaccgattctagtactaacaaagctcacatgaagcaacaa |
192 |
Q |
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| T |
41430362 |
tatataaccaaaactagcaatgttgcgatcaggacatactattggtagacctattctagtactaacaaagctcacatgaagcaacaa |
41430276 |
T |
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