View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_98 (Length: 207)
Name: NF1504_1D_low_98
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_98 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 7606596 - 7606397
Alignment:
| Q |
2 |
tttggtgttctgtcgtccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattacc |
101 |
Q |
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| T |
7606596 |
tttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattacc |
7606497 |
T |
|
| Q |
102 |
agaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7606496 |
agaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatg |
7606397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 7615610 - 7615411
Alignment:
| Q |
2 |
tttggtgttctgtcgtccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattacc |
101 |
Q |
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| T |
7615610 |
tttggtgctctgtgatgcgttccataaaatttgacccacaagaagaagtatttaatatagttgtgataggagttcgaccaaggttagttccaccattacc |
7615511 |
T |
|
| Q |
102 |
agaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatg |
201 |
Q |
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|||| ||||||||||||| | ||||||||||||| || |||||||||||||| |||||| |||| ||||||||||| | ||||||||||||||||||| |
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| T |
7615510 |
agaatattattttggaaatgcacttataagttgtatggttaaaatgaaagttggggagttggtggaagaaggtggactttgtaaaggtgcttgtgagatg |
7615411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 7628965 - 7628782
Alignment:
| Q |
18 |
ccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttgga |
117 |
Q |
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| T |
7628965 |
ccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgcgataggagttagaccaaggcttattccaccattaccagaagattattttgga |
7628866 |
T |
|
| Q |
118 |
aactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatg |
201 |
Q |
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|| | ||||||||||||| || |||||||||| || || |||||||| ||||||||||| | ||||||||||||||||||| |
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| T |
7628865 |
aatgcacttataagttgtatggttaaaatgaaagctgaggaattgttggaggaaggtggactttgtaaaggtgcttgtgagatg |
7628782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 7637411 - 7637236
Alignment:
| Q |
18 |
ccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttgga |
117 |
Q |
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||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| |
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| T |
7637411 |
ccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtgataggagttcgaccaaggttagttccaccgttaccagaagattattttgga |
7637312 |
T |
|
| Q |
118 |
aactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggactatataaaggtgctt |
193 |
Q |
| |
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|| | ||||||||||||| || |||||||||| ||| || |||||||| ||||||||||| | ||||||||||| |
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| T |
7637311 |
aatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggactttgtaaaggtgctt |
7637236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 7655961 - 7656070
Alignment:
| Q |
67 |
ataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttgg |
166 |
Q |
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||||||||| ||||||| ||||||||||||| || |||||||||||||||||| |||||||| |||| | |||||||||||||| |||||||||| |
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| T |
7655961 |
ataggagttagaccaagacttgttccaccattgccggaagattattttggaaacgcgattataggttgcgggtttaaaatgaaagttggggagttgttgg |
7656060 |
T |
|
| Q |
167 |
acgaaggtgg |
176 |
Q |
| |
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| T |
7656061 |
aggaaggtgg |
7656070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 8938714 - 8938835
Alignment:
| Q |
80 |
caaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggact |
179 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8938714 |
caaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggact |
8938813 |
T |
|
| Q |
180 |
atataaaggtgcttgtgagatg |
201 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
8938814 |
atataaaggtgcttgtgagatg |
8938835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 8935878 - 8936059
Alignment:
| Q |
20 |
gttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaa |
119 |
Q |
| |
|
|||||||| || |||||| |||||||||||| |||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
8935878 |
gttccaaaaaaattgacccacaagaagaagtggttaatagaatcgtgataggagttggaccaaggttagttccaccattaccagaatattattttggaaa |
8935977 |
T |
|
| Q |
120 |
ctcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatg |
201 |
Q |
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| T |
8935978 |
tgcagttataagttgtatggttaaaatgacagctggggagttgttgaaggaaggtggactttgtaaaggtgcttgtgagatg |
8936059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 8910943 - 8911098
Alignment:
| Q |
24 |
caaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcg |
123 |
Q |
| |
|
|||||||||||| | |||||| ||||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | |
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| T |
8910943 |
caaacaatttgatccacaagatgaagtatttaatagagtcatgataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgca |
8911042 |
T |
|
| Q |
124 |
attataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggact |
179 |
Q |
| |
|
||| |||||||||| || |||||||||||||| ||| ||||||| ||||||||||| |
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|
| T |
8911043 |
attgtaagttgtatggttaaaatgaaagttggggagctgttggaggaaggtggact |
8911098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 40147139 - 40147241
Alignment:
| Q |
17 |
tccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttgg |
116 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| ||| || | |||| |||||||| | || ||||||||||||||||||| || |||||||||||||| |
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| T |
40147139 |
tccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttgg |
40147238 |
T |
|
| Q |
117 |
aaa |
119 |
Q |
| |
|
||| |
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|
| T |
40147239 |
aaa |
40147241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 8102762 - 8102704
Alignment:
| Q |
61 |
gtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaa |
119 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||||| || ||||||||||||||||| |
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|
| T |
8102762 |
gtcgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaa |
8102704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 6500847 - 6500729
Alignment:
| Q |
2 |
tttggtgttctgtcgtccgttccaaacaatttgacctac-aagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattac |
100 |
Q |
| |
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||||| ||||||| ||| ||||||| || |||||| || |||||||||| || ||| | || | ||||| ||| |||||||| ||||||||| ||||| |
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| T |
6500847 |
tttggcgttctgtgatccattccaaaaaacttgacccaccaagaagaagtttacaatatgttcctaataggcgttagaccaaggcttgttccactattac |
6500748 |
T |
|
| Q |
101 |
cagaagattattttggaaa |
119 |
Q |
| |
|
|| |||||||||||||||| |
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|
| T |
6500747 |
cacaagattattttggaaa |
6500729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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