View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_low_99 (Length: 207)
Name: NF1504_1D_low_99
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 31230832 - 31231012
Alignment:
| Q |
1 |
aaatctacctcgaacactcgtctccctcatcaaaccactcaagcacccaacaaatatccactttatcattaggactctcattcacaagaacaccaagact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
31230832 |
aaatctacctcgaacactcgtctccctcatcaaaccactcaagctcccaacaaatatcaacttt-----taggactctcattcacaagaacaccaagact |
31230926 |
T |
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| Q |
101 |
aaacatgcctagaagccaacatctccacctggtaacaaccccaaatctactgaacatataatagtttagaaatgaccaagttacta |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31230927 |
aaacatgcctagaagccaacatctccacctggtaacaaccccaaatctactgaacatataatagtttagaaatgaccaagttacta |
31231012 |
T |
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